Table 2 Parameter settings of simulation datasets generated from Splatter
From: ScLRTC: imputation for single-cell RNA-seq data via low-rank tensor completion
Parameter | Simulation dataset | Parameter | Simulation dataset |
|---|---|---|---|
version | 1.10.1 | dropout.type | “group” |
nGenes | 1000 | method | “groups” |
nCells | 500 | de.prob | c(0.05, 0.08, 0.01) |
group.prob | c(0.3, 0.3, 0.4) | de.facLoc | 0.5 |
dropout.shape | c (ds, ds, ds), ds ∈ {−0.3,0, 0.05,0.25} | de.facScale | 0.8 |
dropout.mid | Default | dropout. present | Null |