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Fig. 3 | BMC Genomics

Fig. 3

From: Genetic variations for the eggshell crystal structure revealed by genome-wide association study in chickens

Fig. 3

Conditional association analyses (A) and linkage disequilibrium (LD) analysis (B) for TA. The genotype of rs315989578 was added to the multivariate model as a covariate for the conditional analysis. The LD plot of significant SNPs with the total intensity of all peaks in the region ranged from 55.6 to 69.1 Mb. Haplotypes are indicated by sample symbols connected by a solid line. The color represents Hedrick’s multiallelic D’, which indicates the degree of LD between two blocks. TA represents the total integral intensity of all peaks

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