Table 1 Features of the mitogenomes of Cuscuta australis, C. campestris and their close relative Ipomoea nil (NC_031158)
Feature | C. australis | C. campestris | Ipomoea nil |
|---|---|---|---|
Length (bp) | 265,696 | 275,898 | 265,768 |
GC content (%) | 44.0 | 44.3 | 44.5 |
Dispersed repeats (kb) | 57.8 | 94.0 | 15.6 |
Tandem repeats (kb) | 13.2 | 6.89 | 0.67 |
Gene coding length / introns (bp) | |||
atp1 | 1530 | 1530 | 1530 |
atp4 | 579 | 579 | 579 |
atp6 | 1173 | 1173 | 1155 |
atp8 | 477 | 477 | 477 |
atp9 | 285 | 285 | 258 |
ccmB | 627 | 627 | 627 |
ccmC | 726 | 726 | 747 |
ccmFC_1a | 501 | 501 | 531 (“pseudo”) |
ccmFC_1b | 128 | 128 | 92 (“pseudo”) |
ccmFC_2 | 640 | 640 | 562 (“pseudo”) |
ccmFN | 1746 | 1755 | 1764 |
cob | 1179 | 1179 | 1182 |
cox1 | 1584 / 509 | 1584 / 534 | 1584 / 971 |
cox2 | 1023 / 854 | 774 / 867 | 783 / 1343 |
cox3 | 798 | 798 | 798 |
matR | 1911 | 1911 | 1968 |
mttB | 774 | 774 | 840 (“pseudo”) |
nad1_1 | 386 | 386 | 385 |
nad1_2–3 | 274 / 1772 | 274 / 1223 | 275 / 1445 |
nad1_4–5 | 318 / 3982 | 318 / 3776 | 318 / 3604 |
nad2_1–2 | 546 / 1941 | 546 / 1870 | 545 / 1233 |
nad2_3–5 | 921 / 2785, 1833 | 921 / 2348, 1773 | 922 / 2417, 1455 |
nad3 | 357 | 357 | 357 |
nad4 | 1488 / 1478, 2359, 1398 | 1488 / 1498, 2390, 1426 | 1488 / 1418, 3200, 2827 |
nad4L | 303 | 303 | 300 |
nad5_1–2 | 1446 / 838 | 1446 / 857 | 1446 / 844 |
nad5_3 | 22 | 22 | 22 |
nad5_4–5 | 542 / 1088 | 542 / 1175 | 542 / 1339 |
nad6 | 618 | 618 | 618 |
nad7 | 1176 / 1553, 1124, 2144 | 1176 / 1294, 910, 1957 | 1185 / 912, 1468, 1951 |
nad9 | 573 | 573 | 573 |
rpl2 | – | – | – |
rpl5 | 555 | 555 | 555 |
rpl10 | – | – | 489 |
rpl16 | 516 | 456 | 516 |
rps1 | 612 | 612 | 597 |
rps2 | – | – | – |
rps3 | 1830 / 1057 | 1794 / 996 | 1671 / 1510 |
rps4 | 912 | 909 | 933 |
rps7 | – | – | – |
rps10 | – | – | 363 / 902 |
rps11 | – | – | – |
rps12 | 378 | 378 | 378 |
rps13 | 351 | 351 | 351 |
rps14 | 276 (pseudo) | 258 (pseudo) | 303 |
rps19 | 209 (pseudo) | 114 (pseudo) | 285 |
sdh3 | – | – | – |
sdh4 | 431 (pseudo) | 486 (pseudo) | 408 |
rrn5 | 116 | 116 | 119 |
rrn18 | 2075 | 2037 | 1943 |
rrn26 | 3753 | 3656 | 3377 |
trnC-GCA | 71 | 71 | 71 |
trnD-GUC | 74 | 74 | 74 |
trnE-UUC | 72 | 72 | 72 |
trnF-GAA | 74 | 74 | 74 |
trnG-GCC | 72 | 72 | 72 |
trnH-GUG | 74 | 74 | 74 |
trnI-CAU | 74 | 74 | 74 |
trnK-UUU | 73 | 73 | 73 |
trnM-CAU-cp | 73 | 73 | 73 |
trnfM-CAU | 74 | 74 | 74, 74 |
trnN-GUU | 72 | 72 | 72 |
trnP-UGG | 75 | 75 | 74 |
trnQ-UUG | 72 | 72 | 72 |
trnQ-UUG-cp | – | 72 | – |
trnS-GCU | 88 | 88 | 88 |
trnS-GGA | – | – | 88 |
trnS-UGA | 87 | 87 | 87 |
trnT-UGU | 72 | – | – |
trnW-CCA | 74 | 74 | 74 |
trnY-GUA | 83 | 83 | 83 |