Table 3 Genes involved in stage-specific AS and related to fleshy fruit ripening
From: Alternative splicing during fruit development among fleshy fruits
Species | Pathway | Genes with immature stage-specific AS | Genes with ripe stage-specific AS |
|---|---|---|---|
Cucumber | Carotenoid | PSY1 | PDS, ZISO |
Cell wall structure | SlXTH3, SlXTH2 | SlXTH3, SlXTH3, teg1A/TBG3, SlXTH2, PG2a, TBG4, TBG4 | |
Ethylene biosynthesis and signalling | LeCTR1, LeETR5 | LeACS2, LeACS4, SlTPR1, LeACS1A, LeCTR1 | |
Flavonoid/anthocyanin | Â | 4CL, 4CL-like | |
Transcription factor | Â | AP2a | |
Melon | Carotenoid | Â | CrtISO |
Cell wall structure | Â | teg1A/TBG3, PG2a, TBG4 | |
Ethylene biosynthesis and signalling | LeCTR1, LeETR5 | LeACS2, LeACS4, LeETR4, SlTPR1, LeETR2, LeACS1A, LeETR3/NR, LeETR6, LeCTR1, LeETR5, LeETR1 | |
Flavonoid/anthocyanin | Â | LoxC | |
Transcription factor | CNR | AP2a | |
Papaya | Carotenoid | CrtISO | PTOX |
Cell wall structure | PG2a | teg1A/TBG3, LeEXP1, PG2a, TBG4 | |
Ethylene biosynthesis and signalling | LeETR4, LeEIL4, SlTPR1, LeETR2, LeETR3/NR, LeETR6, LeCTR1, LeETR5, LeETR1 | LeACS2, LeACS4, LeACO5, LeACO1, E8, LeCTR1 | |
Flavonoid/anthocyanin | 4CL, 4CL-like | 4CL, 4CL-like | |
Transcription factor | Â | AP2a, FUL2, FUL1, NOR, NAC4 | |
Peach | Carotenoid | ZEP, CrtISO | Â |
Cell wall structure | PG2a | teg1A/TBG3, TBG4 | |
Ethylene biosynthesis and signalling | LeACO5, LeACO1, E8, LeCTR1 | SlTPR1, LeCTR1, LeETR5 | |
Flavonoid/anthocyanin | 4CL, 4CL-like | Â | |
Transcription factor | AP2a, FUL2, FUL1, NOR, NAC4 | AP2a, FUL2, FUL1, NOR, NAC4 |