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Table 3 Genes involved in stage-specific AS and related to fleshy fruit ripening

From: Alternative splicing during fruit development among fleshy fruits

Species Pathway Genes with immature stage-specific AS Genes with ripe stage-specific AS
Cucumber Carotenoid PSY1 PDS, ZISO
Cell wall structure SlXTH3, SlXTH2 SlXTH3, SlXTH3, teg1A/TBG3, SlXTH2, PG2a, TBG4, TBG4
Ethylene biosynthesis and signalling LeCTR1, LeETR5 LeACS2, LeACS4, SlTPR1, LeACS1A, LeCTR1
Flavonoid/anthocyanin   4CL, 4CL-like
Transcription factor   AP2a
Melon Carotenoid   CrtISO
Cell wall structure   teg1A/TBG3, PG2a, TBG4
Ethylene biosynthesis and signalling LeCTR1, LeETR5 LeACS2, LeACS4, LeETR4, SlTPR1, LeETR2, LeACS1A, LeETR3/NR, LeETR6, LeCTR1, LeETR5, LeETR1
Flavonoid/anthocyanin   LoxC
Transcription factor CNR AP2a
Papaya Carotenoid CrtISO PTOX
Cell wall structure PG2a teg1A/TBG3, LeEXP1, PG2a, TBG4
Ethylene biosynthesis and signalling LeETR4, LeEIL4, SlTPR1, LeETR2, LeETR3/NR, LeETR6, LeCTR1, LeETR5, LeETR1 LeACS2, LeACS4, LeACO5, LeACO1, E8, LeCTR1
Flavonoid/anthocyanin 4CL, 4CL-like 4CL, 4CL-like
Transcription factor   AP2a, FUL2, FUL1, NOR, NAC4
Peach Carotenoid ZEP, CrtISO  
Cell wall structure PG2a teg1A/TBG3, TBG4
Ethylene biosynthesis and signalling LeACO5, LeACO1, E8, LeCTR1 SlTPR1, LeCTR1, LeETR5
Flavonoid/anthocyanin 4CL, 4CL-like  
Transcription factor AP2a, FUL2, FUL1, NOR, NAC4 AP2a, FUL2, FUL1, NOR, NAC4