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Table 4 Genomic variants in holarctica isolates with respect to their reference genomes called with three different short-read sequencing datasets

From: Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

  Isolate FSC237 08 T013 12 T0050 12 T0052 12 T0058
NCBI ID NC_006570.2 NC_017463.1 NC_009749.1 NC_009749.1 NC_019551.1
HiSeq Average coverage 3910x 4793x 1432x 3232x 7711x
SNPs 0 207 35 35 96
Indels 0 2 0 0 0
Miseq Average coverage 140x 102x 79x 78x 89x
SNPs 81 312 153 173 246
Indels 0 67 9 12 11
Ion Torrent Average coverage 185x 204x 202x 163x 92x
SNPs 0 189 49 47 94
Indels 1 619 611 617 924