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Table 6 Clades, genes, insertion sequences and FPI in isolates and reference strains. The number of detected insertion sequences in assembled genomes corresponds to those in respective references (Table 4)

From: Testing assembly strategies of Francisella tularensis genomes to infer an evolutionary conservation analysis of genomic structures

  08 T0013 12 T0050 12 T0052 12 T0058 FSC237 NC_017463.1 NC_009749.1 NC_019551.1 NC_006570.2 NC_007880.1 NZ_CP009633.1
Strain F. Jul. holarctica isolate F. Jul. holarctica isolate F. Jul. holarctica isolate F. Jul. holarctica isolate F. Jul. tularensis isolate F. Jul. holarctica OSU18 F. Jul. holarctica FTNF002–00 F. Jul. holarctica FSC200 F. Jul. tularensis SCHU S4 F. Jul. holarctica LVS F. Jul. novicida U112
Source Hare, Ehingen (Bavaria, Germany) 2008 Hare, Herringhausen (North Rhine-Westphalia, Germany) Tick, Germany Hare, Heideck (Bavaria, Germany) Human, Ohio 1941 Dead beaver found near Red Rock, Okla. 1978 Human, France 2002 Human, Ljusdal, Sweden 1998 Human, Ohio 1941 Live vaccine strain, Russia 1930 Turbid saltwater, Utah 1950
Clade B.4 B.11 B.11 B.33 A.I.13 B.4 B.11 B.12 A.I.13 B.24 T/N.1
Size (bp) 1,893,712 1,890,831 1,890,859 1,913,616 1,892,771 1,895,727 1,890,909 1,894,157 1,892,775 1,895,994 1,910,592
Genes 2153 2151 2149 2164 2080 2162 2145 2143 2078 2147 1845
CDS 2104 2102 2100 2110 2031 2113 2096 2094 2029 2098 1796
rRNA 10 10 10 13 10 10 10 10 10 10 10
tRNA 38 38 38 40 38 38 38 38 38 38 38
tmRNA 1 1 1 1 1 1 1 1 1 1 1
FPI 2 2 2 2 2 2 2 2 2 2 1
ISFtu1 59 59 59 59 53 61 59 59 53 59 1
ISFtu2 42 42 42 42 16 42 42 42 16 43 17
ISFtu3 3 3 3 3 3 3 3 3 3 3 5
ISFtu4 2 2 2 2 1 2 2 2 1 2 1
ISFtu5 1 1 1 1 1 1 1 1 1 1 0
ISFtu6 1 1 1 1 1 1 1 1 1 1 0