Table 1 Summary of transposable elements identified in camelid draft genomes using a species-specific de novo library
| Â | Â | C. dromedarius | C. bactrianus | C. ferus | V. pacos | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Type | Subtype | Number | Length (bp) | % | Number | Length (bp) | % | Number | Length (bp) | % | Number | Length (bp) | % |
SINEs | Â | 278868 | 31857598 | 1.59 | 281475 | 33148009 | 1.66 | 283439 | 35670873 | 1.78 | 283725 | 33811705 | 1.56 |
| Â | Alu/B1 | 0 | 0 | 0.00 | 0 | 0 | 0.00 | 0 | 0 | 0.00 | 0 | 0 | 0.00 |
| Â | MIRs | 277345 | 31646134 | 1.58 | 279944 | 32933495 | 1.65 | 281911 | 35456137 | 1.76 | 282207 | 33598228 | 1.55 |
LINEs | Â | 529041 | 205166126 | 10.24 | 533744 | 212014107 | 10.64 | 549855 | 231412043 | 11.52 | 581214 | 226910732 | 10.45 |
| Â | LINE1 | 350498 | 156418155 | 7.81 | 354589 | 162643009 | 8.16 | 366661 | 181254065 | 9.02 | 396675 | 176469418 | 8.12 |
| Â | LINE2 | 148769 | 41148875 | 2.05 | 149561 | 41824413 | 2.10 | 153057 | 42340613 | 2.11 | 154447 | 42875454 | 1.97 |
| Â | L3/CR1 | 18721 | 4530167 | 0.23 | 18851 | 4558065 | 0.23 | 18962 | 4611963 | 0.23 | 19141 | 4639455 | 0.21 |
| Â | RTE | 9419 | 2660649 | 0.13 | 9360 | 2664989 | 0.13 | 9435 | 2693791 | 0.13 | 9562 | 2642926 | 0.12 |
LTR elements | Â | 2594909 | 407821551 | 20.35 | 2419041 | 378419511 | 18.99 | 2331615 | 339335142 | 16.89 | 2665421 | 431052951 | 19.84 |
| Â | ERVL | 662080 | 105706311 | 5.27 | 605948 | 101811660 | 5.11 | 533741 | 83612548 | 4.16 | 654184 | 107467377 | 4.95 |
| Â | ERVL-MaLRs | 1026977 | 162691546 | 8.12 | 849467 | 141960364 | 7.12 | 777378 | 116645292 | 5.81 | 1031590 | 165237845 | 7.61 |
| Â | ERV_classI | 475024 | 80237999 | 4.00 | 561059 | 87160641 | 4.37 | 574643 | 85619681 | 4.26 | 529102 | 94406478 | 4.35 |
| Â | ERV_classII | 210298 | 24634450 | 1.23 | 181906 | 19392527 | 0.97 | 186502 | 23168720 | 1.15 | 232541 | 27934704 | 1.29 |
DNA transposons | Â | 276980 | 50575476 | 2.52 | 280059 | 52067181 | 2.61 | 284093 | 58877931 | 2.93 | 285372 | 52393874 | 2.41 |
| Â | hAT-Charlie | 162951 | 25352221 | 1.27 | 164860 | 26366817 | 1.32 | 166487 | 31267569 | 1.56 | 167370 | 26234946 | 1.21 |
| Â | TcMar-Tigger | 41555 | 11263825 | 0.56 | 42108 | 11407670 | 0.57 | 43542 | 12529407 | 0.62 | 43728 | 11791963 | 0.54 |
Helitrons | Â | 386049 | 38090118 | 1.90 | 443857 | 39651774 | 1.99 | 487720 | 46043445 | 2.29 | 379112 | 37564847 | 1.73 |
Unclassified | Â | 3508 | 564776 | 0.03 | 3516 | 568373 | 0.03 | 3556 | 574586 | 0.03 | 3538 | 565582 | 0.03 |
Total | Â | 4069355 | 734069793 | 36.63 | 3961692 | 718445875 | 36.05 | 3940278 | 711915199 | 35.43 | 4198382 | 783294957 | 36.06 |