Fig. 2

Differentially expressed genes in response to S. aureus MOK023 and MOK124. A The number of significant DE genes (Benjamini-Hochberg adjusted P-value < 0.05, log₂ fold change threshold > 1) which were up- (red) and downregulated (blue) in milk somatic cells in response to strains MOK023 and MOK124 relative to pre-infection. B Top 5 most significant up- and downregulated DE genes in response to infection with MOK023. C Top 5 most significant up- and downregulated DE genes in response to infection with MOK124. Genes with lowest adjusted P value were selected at each time point. In the case of genes upregulated at 24 hpi in response to infection with MOK023 two genes had the same adjusted P value and so both are included