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Table 3 Variants obtained with whole-exome sequencing located in 58 genes in the swine genome

From: A joint analysis using exome and transcriptome data identifies candidate polymorphisms and genes involved with umbilical hernia in pigs

Variant position

Gene symbol

Exon

MYO19, MYH8, MYH3, ENSSSCG00000038539, MYH4, ENSSSCG00000007733, ENSSSCG00000033141, CCT6A, ZNF713, ENSSSCG00000036685, ITAGM, ZNF646, SETD1A, STX4, RNF40, HSD3B7, CCDC189, TAMALIN, EPHB2, ELOA and OTOP1.

Intron

DHRS11, MYH13, MYH8, MYH3, MYH4, UNC5D, SLC22A11, ENSSSCG00000033141, RARB, ENSSSCG00000047703, MMS19, UNC5D, SLC22A11, KCTD7, ENSSSCG00000007733, ZNF713, SEPTIN14, CCT6A, SETDA1, ZNF629, RNF40, CCDC189, DEDD, NIT1, TAMALIN, EPHB2, TEX46, LUZP1, LYPLA2, CNR2, FUCA1, PAPLAN, PDLIM5 and RAPGEF5.

Upstream

MYH3, HSD3B7, SETD1A, ORAI3, RNF40, PFDN2, CNR2, CLIC4, UBASH3B, LOC100514433, ENSSSCG00000049720, LOC106509673, ENSSSCG00000018553, ENSSSCG00000033141, SUMF2 and ENSSSCG00000007735

5′ UTR

ZNF713, BCKDK, ZNF629, RNF40, CNR2, ENSSSCG00000036685 and ENSSSCG00000007733.

Downstream

DHRS11, ADPRM, KCTD7, ZNF713, PRSS53, VKORC1, HSD3B7, STX1B, SETD1A, RNF40, ZNF629, PHKG2, ROCK2, SLC66A3, NIT1, EPHB2, ENSSSCG00000047341, ENSSSCG00000018553, ENSSSCG00000033141 and ENSSSCG00000027233

3′ UTR

ZNHIT3, MYO19, DHRS11, KCTD7, CCT6A, ZNF713, STX1B, HSD3B7, ORAI3, ZNF629, PHKG2 and EPHB2.