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Table 4 Variants obtained with transcriptome sequencing located in the 27 genes in the swine genome

From: A joint analysis using exome and transcriptome data identifies candidate polymorphisms and genes involved with umbilical hernia in pigs

Variant position

Gene symbol

Exon

ACACA, ENSSSCG00000007733, CCT6A, ZNF713, ITGAM, ZNF646, SETD1A, RNF40, ORAI3, ZNF629, EPHB2 and ELOA.

Intron

DHRS11, KCTD7, SLC5A2, ZNF629 and CCT6A

Downstream

DHRS11, CREB3L2, KCTD7, PRSS53, VKORC1, SETD1A, STX1B, RNF40, ENSSSCG00000033141 and ENSSSCG00000018553

Upstream

HSD3B7, SETD1A, SUMF2, ENSSSCG00000033141 and ENSSSCG00000018553

3′ UTR

DHRS11, EOGT, CREB3L2, KCTD7, CCT6A, HSD3B7, RUSF1, ORAI3, ZNF629, EPHB2 and CLIC4.

5′ UTR

ZNF713, BCKDK and ZNF629