Table 1 The overlap between eQTL analysis, ASE analysis and correlation analysis
gene_name | eQTL analysis | ASE analysis | Correlation analysis | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
SNP_id | pvalue | FDR | SNP_id | Het | ASE | ratio | cor | pvalue | FDR | |
EMG1 | 5:64350471 | 2.28E-29 | 1.02E-24 | 5:63751365 | 103 | 103 | 1.00 | 0.215 | 5.76E-03 | 6.20E-03 |
PCTP | 12:32427760 | 2.80E-12 | 2.74E-09 | 12:32062640 | 43 | 11 | 0.26 | 0.212 | 6.43E-03 | 7.30E-03 |
NAXE | 4:93673165 | 2.76E-11 | 2.03E-08 | 4:93495840 | 69 | 56 | 0.81 | 0.243 | 1.72E-03 | 1.90E-03 |
EIF2B3 | 6:167199552 | 2.00E-10 | 1.17E-07 | 6:166438671 | 49 | 10 | 0.20 | −0.211 | 6.75E-03 | 7.10E-03 |
SLC9A3R1 | 12:6284901 | 1.04E-08 | 3.55E-06 | 12:6468404 | 160 | 98 | 0.61 | 0.208 | 7.47E-03 | 9.00E-03 |
ZFAND2B | 15:120963216 | 1.48E-08 | 4.85E-06 | 15:121243305 | 74 | 73 | 0.99 | 0.242 | 1.78E-03 | 2.00E-03 |
MRPS11 | 1:191048963 | 1.49E-07 | 3.63E-05 | 1:191321445 | 132 | 61 | 0.46 | 0.242 | 1.82E-03 | 1.90E-03 |
C1orf123 | 6:158874827 | 6.78E-07 | 1.34E-04 | 6:159011592 | 43 | 21 | 0.49 | 0.206 | 8.11E-03 | 8.90E-03 |
PRDX5 | 2:7551456 | 1.01E-06 | 1.86E-04 | 2:7803041 | 88 | 10 | 0.11 | 0.245 | 1.60E-03 | 1.60E-03 |
MRPL16 | 2:11716316 | 1.01E-06 | 1.86E-04 | 2:11694100 | 62 | 29 | 0.47 | 0.209 | 7.25E-03 | 7.40E-03 |
MGST2 | 8:86943096 | 4.96E-06 | 6.83E-04 | 8:87328624 | 149 | 86 | 0.58 | 0.240 | 1.94E-03 | 1.90E-03 |
IFNGR2 | 13:196334437 | 6.58E-06 | 8.67E-04 | 13:197020918 | 170 | 16 | 0.09 | 0.197 | 1.15E-02 | 9.90E-03 |
IL10RB | 13:196629902 | 1.00E-05 | 1.21E-03 | 13:196860215 | 39 | 19 | 0.49 | 0.202 | 9.40E-03 | 8.00E-03 |
DGAT2 | 9:9831161 | 1.02E-05 | 1.24E-03 | 9:10063315 | 152 | 117 | 0.77 | 0.322 | 2.68E-05 | 1.00E-05 |
SMIM20 | 8:19726922 | 2.81E-05 | 2.77E-03 | 8:19714368 | 175 | 143 | 0.82 | 0.269 | 4.93E-04 | 1.10E-03 |
AGT | 14:59704514 | 3.81E-05 | 3.54E-03 | 14:59648664 | 177 | 85 | 0.48 | 0.345 | 6.09E-06 | 1.00E-05 |
ATP6V1F | 18:20146282 | 5.54E-05 | 4.72E-03 | 18:19756485 | 166 | 76 | 0.46 | 0.316 | 3.78E-05 | 1.00E-04 |
PLBD1 | 5:57889765 | 7.38E-05 | 5.94E-03 | 5:57951366 | 82 | 16 | 0.20 | −0.265 | 5.97E-04 | 3.00E-04 |
CDC34 | 2:77362555 | 9.82E-05 | 7.42E-03 | 2:77768209 | 188 | 96 | 0.51 | 0.249 | 1.32E-03 | 1.80E-03 |
FRMD3 | 10:31523619 | 2.91E-04 | 1.68E-02 | 10:31714269 | 115 | 25 | 0.22 | 0.228 | 3.32E-03 | 2.40E-03 |
ENSSSCG00000032003 | 2:5854819 | 5.83E-04 | 2.82E-02 | 2:4978950 | 183 | 135 | 0.74 | 0.251 | 1.18E-03 | 1.20E-03 |