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Table 1 The overlap between eQTL analysis, ASE analysis and correlation analysis

From: Trait correlated expression combined with eQTL and ASE analyses identified novel candidate genes affecting intramuscular fat

gene_name eQTL analysis ASE analysis Correlation analysis
SNP_id pvalue FDR SNP_id Het ASE ratio cor pvalue FDR
EMG1 5:64350471 2.28E-29 1.02E-24 5:63751365 103 103 1.00 0.215 5.76E-03 6.20E-03
PCTP 12:32427760 2.80E-12 2.74E-09 12:32062640 43 11 0.26 0.212 6.43E-03 7.30E-03
NAXE 4:93673165 2.76E-11 2.03E-08 4:93495840 69 56 0.81 0.243 1.72E-03 1.90E-03
EIF2B3 6:167199552 2.00E-10 1.17E-07 6:166438671 49 10 0.20 −0.211 6.75E-03 7.10E-03
SLC9A3R1 12:6284901 1.04E-08 3.55E-06 12:6468404 160 98 0.61 0.208 7.47E-03 9.00E-03
ZFAND2B 15:120963216 1.48E-08 4.85E-06 15:121243305 74 73 0.99 0.242 1.78E-03 2.00E-03
MRPS11 1:191048963 1.49E-07 3.63E-05 1:191321445 132 61 0.46 0.242 1.82E-03 1.90E-03
C1orf123 6:158874827 6.78E-07 1.34E-04 6:159011592 43 21 0.49 0.206 8.11E-03 8.90E-03
PRDX5 2:7551456 1.01E-06 1.86E-04 2:7803041 88 10 0.11 0.245 1.60E-03 1.60E-03
MRPL16 2:11716316 1.01E-06 1.86E-04 2:11694100 62 29 0.47 0.209 7.25E-03 7.40E-03
MGST2 8:86943096 4.96E-06 6.83E-04 8:87328624 149 86 0.58 0.240 1.94E-03 1.90E-03
IFNGR2 13:196334437 6.58E-06 8.67E-04 13:197020918 170 16 0.09 0.197 1.15E-02 9.90E-03
IL10RB 13:196629902 1.00E-05 1.21E-03 13:196860215 39 19 0.49 0.202 9.40E-03 8.00E-03
DGAT2 9:9831161 1.02E-05 1.24E-03 9:10063315 152 117 0.77 0.322 2.68E-05 1.00E-05
SMIM20 8:19726922 2.81E-05 2.77E-03 8:19714368 175 143 0.82 0.269 4.93E-04 1.10E-03
AGT 14:59704514 3.81E-05 3.54E-03 14:59648664 177 85 0.48 0.345 6.09E-06 1.00E-05
ATP6V1F 18:20146282 5.54E-05 4.72E-03 18:19756485 166 76 0.46 0.316 3.78E-05 1.00E-04
PLBD1 5:57889765 7.38E-05 5.94E-03 5:57951366 82 16 0.20 −0.265 5.97E-04 3.00E-04
CDC34 2:77362555 9.82E-05 7.42E-03 2:77768209 188 96 0.51 0.249 1.32E-03 1.80E-03
FRMD3 10:31523619 2.91E-04 1.68E-02 10:31714269 115 25 0.22 0.228 3.32E-03 2.40E-03
ENSSSCG00000032003 2:5854819 5.83E-04 2.82E-02 2:4978950 183 135 0.74 0.251 1.18E-03 1.20E-03
  1. “Het” represents the total number of observed heterozygotes, and “ASE” means the number of heterozygotes that displayed ASE. “cor” represents the Pearson correlation coefficient