Table 2 The overlap between eQTL analysis, GWAS analysis and correlation analysis
SNP_id | Gene_Name | Correlation analysis | eQTL analysis | GWAS analysis | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
cor | pvalue | FDR | r | pvalue | FDR | type | r | pvalue | ||
ALGA0078039 | AGT | 0.34 | 6.09E-06 | 1.00E-05 | 0.26 | 1.02E-03 | 4.17E-02 | cis | 0.31 | 1.06E-04 |
WU_10.2_5_66693369 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | 0.69 | 7.32E-23 | 2.10E-18 | cis | 0.28 | 5.29E-04 |
M1GA0007834 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | 0.66 | 2.85E-20 | 3.58E-16 | cis | 0.27 | 7.90E-04 |
ALGA0032380 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | 0.52 | 7.12E-12 | 6.03E-09 | cis | 0.27 | 8.70E-04 |
ALGA0032795 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | −0.52 | 7.46E-12 | 2.90E-06 | trans | −0.27 | 7.06E-04 |
ASGA0026250 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | −0.52 | 7.46E-12 | 2.90E-06 | trans | −0.27 | 7.06E-04 |
WU_10.2_5_73855132 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | −0.52 | 7.46E-12 | 2.90E-06 | trans | −0.27 | 7.06E-04 |
WU_10.2_5_73348031 | EMG1 | 0.21 | 5.76E-03 | 6.20E-03 | −0.50 | 3.61E-11 | 1.14E-05 | trans | −0.26 | 9.92E-04 |
ALGA0065989 | PCTP | 0.21 | 6.43E-03 | 7.30E-03 | −0.35 | 6.72E-06 | 8.81E-04 | cis | −0.30 | 1.58E-04 |