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Table 2 The overlap between eQTL analysis, GWAS analysis and correlation analysis

From: Trait correlated expression combined with eQTL and ASE analyses identified novel candidate genes affecting intramuscular fat

SNP_id Gene_Name Correlation analysis eQTL analysis GWAS analysis
cor pvalue FDR r pvalue FDR type r pvalue
ALGA0078039 AGT 0.34 6.09E-06 1.00E-05 0.26 1.02E-03 4.17E-02 cis 0.31 1.06E-04
WU_10.2_5_66693369 EMG1 0.21 5.76E-03 6.20E-03 0.69 7.32E-23 2.10E-18 cis 0.28 5.29E-04
M1GA0007834 EMG1 0.21 5.76E-03 6.20E-03 0.66 2.85E-20 3.58E-16 cis 0.27 7.90E-04
ALGA0032380 EMG1 0.21 5.76E-03 6.20E-03 0.52 7.12E-12 6.03E-09 cis 0.27 8.70E-04
ALGA0032795 EMG1 0.21 5.76E-03 6.20E-03 −0.52 7.46E-12 2.90E-06 trans −0.27 7.06E-04
ASGA0026250 EMG1 0.21 5.76E-03 6.20E-03 −0.52 7.46E-12 2.90E-06 trans −0.27 7.06E-04
WU_10.2_5_73855132 EMG1 0.21 5.76E-03 6.20E-03 −0.52 7.46E-12 2.90E-06 trans −0.27 7.06E-04
WU_10.2_5_73348031 EMG1 0.21 5.76E-03 6.20E-03 −0.50 3.61E-11 1.14E-05 trans −0.26 9.92E-04
ALGA0065989 PCTP 0.21 6.43E-03 7.30E-03 −0.35 6.72E-06 8.81E-04 cis −0.30 1.58E-04
  1. “cor” represents the Pearson correlation coefficient. “r” represents the correlation coefficient evaluated by matrixEQTL