Table 2 Call Rate and Accuracy of UPIP-qPCR, TaqMan Probe-qPCR and KASP
From: Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping
SNPs | Call rate (n = 224) | Accuracy (n = 224) | ||||
|---|---|---|---|---|---|---|
UPIP-qPCR | TaqMan | KASP | UPIP-qPCR | TaqMan | KASP | |
rs671 | 99.11% | 98.21% | 79.46% | 100.00% | 100.00% | 94.94% |
rs1057910 | 100.00% | 98.66% | 75.45% | 100.00% | 100.00% | 97.63% |
rs9923231 | 100.00% | 97.77% | 83.48% | 100.00% | 100.00% | 92.51% |
rs1801131 | 100.00% | 97.32% | 88.39% | 100.00% | 100.00% | 96.46% |
rs1801133 | 99.55% | 95.09% | 73.66% | 100.00% | 100.00% | 93.94% |
rs1801394 | 100.00% | 96.88% | 89.73% | 100.00% | 100.00% | 94.53% |