Integrated analyses of miRNA-mRNA expression profiles of ovaries reveal the crucial interaction networks that regulate the prolificacy of goats in the follicular phase

Liu, Yufang; Zhou, Zuyang; He, Xiaoyun; Tao, Lin; Jiang, Yanting; Lan, Rong; Hong, Qionghua; Chu, Mingxing

doi:10.1186/s12864-021-08156-2

Table 1 DE mRNA-miRNA pairs in the ovaries of Yunshang black goats

From: Integrated analyses of miRNA-mRNA expression profiles of ovaries reveal the crucial interaction networks that regulate the prolificacy of goats in the follicular phase

miRNA	target_mRNA	target_gene
chi-miR-106a-5p	XM_018041407.1; XR_001918311.1; XM_018064479.1; XM_018057889.1; XM_018053373.1	IDE; LOC102191038; MINK1; PTPRT; SYNE1
chi-miR-1271-3p	XM_018054838.1; XM_005686081.3; XM_013969748.2; XM_018066975.1; XM_018048727.1; XM_018040274.1; XM_018053425.1; XM_018044841.1; XM_018064209.1; XR_001918311.1; XM_018041660.1; XM_018053556.1; XM_018059006.1; XM_018039504.1; XM_018043955.1; XM_018061012.1; XM_018057639.1	ADRA2B; AREL1; ARRB1; ATG7; CDC42EP1; CLEC16A; FNDC1; GNB1L; LOC102179130; LOC102191038; MAP 7D1; MYO9A; NCAPD3; PIAS2; STARD8; THOC5; TXLNA
chi-miR-129-3p	XM_018049845.1; XM_018063764.1; XM_005681729.3; XM_018058010.1; XM_013962525.2; XM_018064112.1; XM_018053317.1	ADD1; EXOC7; JCHAIN; S100PBP; SLC16A1; SPC25; STXBP5
chi-miR-133a-5p	XM_018064437.1; XR_001917960.1; XM_018056398.1; XM_005690449.3; XM_013963206.2; XM_018043375.1; XM_005699249.3; XM_018039076.1; XM_018052928.1	ATP2A3; C1H3orf70; CLYBL; CR2; LOC100860959; LOC102176672; RPS24; SYNGAP1; UBE3D
chi-miR-150	XM_005689442.3; XM_018044583.1	C15H11orf57; CASK
chi-miR-197-5p	XM_013974705.2; XM_013964246.2; XM_005686081.3; XM_018040526.1; XM_018048707.1; XM_005685676.3; XM_018059948.1; XM_018066137.1; XM_005698368.3; XM_018060910.1; XM_005697014.3; XM_018041659.1; XM_018040051.1; XM_018066046.1; XM_005695796.3; XM_018056069.1; XM_005688536.3; XM_018060998.1; XM_018039563.1; XM_013963935.1; XM_018043108.1; XM_018059808.1; XR_001918292.1; XM_005687506.3; XM_005694147.3; XM_018064309.1; XM_018043955.1; XM_018054388.1; XM_018053944.1; XM_018057639.1; XM_018061433.1; XM_018059762.1; XM_018057873.1; XM_018061466.1	ABI3BP; ANO2; AREL1; ARHGAP17; BCL2L13; CA12; CFAP74; CLK3; CUEDC2; DERL3; DSG3; EBF3; EME2; EXOC3L4; FLNB; KCNT1; MANBAL; MTMR3; MYO5B; NACA; PICALM; POU2AF1; PPARGC1B; SERTM1; SLC16A5; SPAG5; STARD8; STARD9; TTLL5; TXLNA; ULK1; USP2; ZHX3; ZNF605
chi-miR-20b	XM_018042438.1	RBP1
chi-miR-22-5p	XM_018065844.1; XM_018049669.1; XM_018059762.1	LIMS2; TFDP2; USP28
chi-miR-2290	XR_001917611.1; XM_018065632.1; XM_018064479.1; XM_018055379.1	CC2D1B; EGFLAM; MINK1; WNT4
chi-miR-2332	XM_018058543.1; XM_018066965.1	FAM91A1; MKRN2OS
chi-miR-324-3p	XM_018040427.1; XM_018067206.1; XM_013964246.2; XM_018040526.1; XM_018040189.1; XM_018051909.1; XM_018044583.1; XM_018061310.1; XM_005686853.3; XM_018059700.1; XM_018055747.1; XM_018059522.1; XM_018060910.1; XM_013972218.2; XM_018057810.1; XM_018056058.1; XM_018048123.1; XM_005701565.3; XM_018065660.1; XM_018062272.1; XM_018066878.1; XM_018064290.1; XM_018049887.1; XM_005690341.3; XM_018058938.1; XR_001919614.1; XM_018058118.1; XM_018063080.1; XM_018064421.1; XM_018051474.1; XM_018042980.1; XM_018049665.1; XM_018039202.1; XM_018055379.1; XM_018057873.1; XM_018054539.1	ABCA3; ALS2CL; ANO2; ARHGAP17; ATXN2L; CAD; CASK; CLIP1; CLIP4; CXCR5; DENND1A; DENND5A; DERL3; DHRS7B; DLGAP4; GBGT1; ITGA7; LOC102174648; LPCAT1; LRP3; LRRFIP2; LYRM9; MFSD7; MS4A1; OBSL1; PGS1; PHC2; PPP6R1; RAP1GAP2; SLC25A42; SYVN1; TFDP2; TMEM14A; WNT4; ZHX3; ZNF219
chi-miR-671-5p	XM_005675149.3; XM_005682894.3; XM_005683975.3; XM_013962885.2; XM_005686284.2; XM_018066965.1; XM_018038476.1; XM_018058490.1; XM_005701709.3; XM_018066993.1; XM_018051145.1	ADIPOQ; AZU1; DMTN; FAAH; LYG2; MKRN2OS; SCN10A; SP140; TCF19; TRAK1; ZNF557
chi-miR-877-3p	XM_018038615.1; XM_018067206.1; XM_018064437.1; XM_018042365.1; XM_018061265.1; XM_013974717.2; XM_018060910.1; XM_018064555.1; XM_018050130.1; XM_018043465.1; XM_018054948.1; XM_018064688.1; XM_018057830.1; XM_018045584.1; XM_018048271.1; XR_001919058.1; NM_001285620.1; XM_018050077.1; XM_018048718.1; XM_005690341.3; XM_005687901.3; XM_018064421.1; XM_018055004.1; XM_013962525.2; XM_018056156.1; XM_018063111.1; XM_018047914.1; XM_018040289.1	ABHD16A; ALS2CL; ATP2A3; CAMK2G; CAMKK2; CD19; DERL3; ELP5; G3BP1; INCENP; LOC102168673; LOC102186431; LOC108633201; LOC108635459; LOC108636023; LOC108637413; MAP 34-B; MAT2B; MICAL3; MS4A1; PARD3; RAP1GAP2; RTKN; SLC16A1; TMEM8C; TNNT1; YAF2; ZNF48
novel_1007	XM_018040882.1	GTF2IRD1
novel_310	XM_018040526.1; XM_018059648.1; XM_018042405.1; XM_018051199.1; XM_018064421.1	ARHGAP17; ARHGEF12; KCNMA1; PALM3; RAP1GAP
novel_438	XM_018066196.1; XM_018042503.1; XM_018067206.1; XM_018048138.1; XM_018046320.1; XM_013969748.2; XM_018040189.1; XM_018038690.1; XM_018038657.1; XM_005699439.3; XM_018048727.1; XR_001919744.1; XM_018038867.1; XM_018043863.1; XM_005683975.3; XR_001918836.1; XM_018065632.1; XM_018052116.1; XM_005695796.3; XM_018061064.1; XM_018048123.1; XM_018042405.1; XM_018059422.1; XM_018043129.1; XM_018065660.1; XM_018054954.1; XM_018064479.1; XM_018060966.1; XM_018064342.1; XM_018043433.1; XM_018050582.1; XM_018061395.1; XM_018057706.1; XM_018044560.1; XM_018040897.1; XM_018038847.1; XM_018063080.1; XM_018052538.1; XR_001919368.1; XM_018057252.1; XM_005675055.2; XM_018064900.1; XM_018063718.1; XM_005694147.3; XM_018062143.1; XM_013962917.2; XM_018039076.1; XM_018057826.1; XM_013976203.2; XM_018038907.1; XM_018048633.1; XM_018050486.1; XM_018051734.1; XM_018040289.1; XM_018064916.1	ADAMTSL3; AIFM2; ALS2CL; ANKS1B; ARHGEF11; ARRB1; ATXN2L; BEND6; CAPN11; CCDC81; CDC42EP1; CDK12; DDR1; DLG3; DMTN; DNMT3A; EGFLAM; FAM214B; FLNB; HPS4; ITGA7; KCNMA1; LOC102178093; LOC102180829; LPCAT1; MAP 4; MINK1; MORC2; MYO18A; MYRF; N4BP3; NCOR2; NOL4L; PARS2; PKMYT1; PPP1R10; PPP6R1; PRMT2; PXN; RIN2; RUBCN; SAMD14; SEPT9; SLC16A5; SLC9A5; ST3GAL3; SYNGAP1; TLDC2; TMEM164; TNXB; TULP3; WDR18; WDR4; ZNF48; ZNF652
novel_535	XM_018040734.1; XM_005690924.3; XM_018064170.1; XM_018049845.1; XM_013964246.2; XM_018043902.1; XM_018040526.1; XM_018061343.1; XM_018064437.1; XM_018040189.1; XM_005682894.3; XM_018051909.1; XM_018040274.1; XM_018040051.1; XM_018059451.1; XM_018039067.1; XM_018044491.1; XM_018043071.1; XM_018044841.1; XM_018049805.1; XR_001919624.1; XM_005696018.3; XM_018062272.1; XM_013972345.2; XM_018058938.1; XM_018052180.1; XM_018040897.1; XM_005699158.3; XM_018064421.1; XM_005694147.3; XM_018051474.1; XM_018040224.1; XM_018066557.1; XM_018041207.1; XM_018061012.1; XM_018050841.1; XM_018056156.1; XM_013971985.2; XM_018066993.1	ABCC1; ABL2; ACACA; ADD1; ANO2; AP1S2; ARHGAP17; ARL6IP4; ATP2A3; ATXN2L; AZU1; CAD; CLEC16A; EME2; FAM160A2; FARS2; FBXW5; GAB2; GNB1L; HGFAC; JMJD6; LOC102173049; LRP3; METTL23; OBSL1; PAX5; PKMYT1; PSAP; RAP1GAP; SLC16A5; SLC25A42; SMURF1; STRA6; TCF7L2; THOC5; TJP3; TMEM8C; TNFRSF13B; TRAK1
novel_772	XM_018053542.1; XM_013972218.2; XM_018064916.1	BMP4; DHRS7B; ZNF652
novel_929	XM_018053425.1	FNDC1

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