Skip to main content

Table 4 Total 16 CPs related with osteogenesis generated from 11 GEO data sets

From: Predicting the targets of IRF8 and NFATc1 during osteoclast differentiation using the machine learning method framework cTAP

ID GSE ID Platform Control population Test population Context
1 GSE111237 GPL6885 osteoclast progenitors mature-osteoclast progenitors OCU
2 GSE142866 GPL17021 No RANKL RANKL OCU
3 GSE142866 GPL17021 RANKL RANKL with LEA OCD
4 GSE149887 GPL21103 Mo (macrophages) Oc (osteoclasts) OCU
5 GSE17563 GPL339 bone marrow treated with hRANKL 0 hr bone marrow treated with hRANKL 24h OCU
6 GSE17563 GPL339 bone marrow treated with hRANKL 0 hr bone marrow treated with hRANKL 72h OCU
7 GSE20850 GPL1261 Macrophages Osteoclasts OCU
8 GSE30160 GPL1261 WT RANK IVVY Knockin OCD
9 GSE37219 GPL8321 WT NFATc1-deficient OC OCD
10 GSE57468 GPL6885 BMM RANKL 1day BMM RANKL 0day OCD
11 GSE57468 GPL6885 BMM RANKL 2day BMM RANKL 0day OCD
12 GSE57468 GPL6885 BMM RANKL 3day BMM RANKL 0day OCD
13 GSE76988 GPL13112 wild-type osteoclast M-CSF RANKL 24H wild-type osteoclast M-CSF RANKL IL-3 24H OCD
14 GSE76988 GPL13112 wild-type osteoclast precursor M-CSF 24H wild-type osteoclast M-CSF RANKL 24H OCU
15 GSE72846 GPL17021 Control MMP9 KO OCD
16 GSE135479 GPL21103 RANKL FOXO3 RANKL OCU