Table 4 Total 16 CPs related with osteogenesis generated from 11 GEO data sets
ID | GSE ID | Platform | Control population | Test population | Context |
|---|---|---|---|---|---|
1 | GSE111237 | GPL6885 | osteoclast progenitors | mature-osteoclast progenitors | OCU |
2 | GSE142866 | GPL17021 | No RANKL | RANKL | OCU |
3 | GSE142866 | GPL17021 | RANKL | RANKL with LEA | OCD |
4 | GSE149887 | GPL21103 | Mo (macrophages) | Oc (osteoclasts) | OCU |
5 | GSE17563 | GPL339 | bone marrow treated with hRANKL 0 hr | bone marrow treated with hRANKL 24h | OCU |
6 | GSE17563 | GPL339 | bone marrow treated with hRANKL 0 hr | bone marrow treated with hRANKL 72h | OCU |
7 | GSE20850 | GPL1261 | Macrophages | Osteoclasts | OCU |
8 | GSE30160 | GPL1261 | WT | RANK IVVY Knockin | OCD |
9 | GSE37219 | GPL8321 | WT | NFATc1-deficient OC | OCD |
10 | GSE57468 | GPL6885 | BMM RANKL 1day | BMM RANKL 0day | OCD |
11 | GSE57468 | GPL6885 | BMM RANKL 2day | BMM RANKL 0day | OCD |
12 | GSE57468 | GPL6885 | BMM RANKL 3day | BMM RANKL 0day | OCD |
13 | GSE76988 | GPL13112 | wild-type osteoclast M-CSF RANKL 24H | wild-type osteoclast M-CSF RANKL IL-3 24H | OCD |
14 | GSE76988 | GPL13112 | wild-type osteoclast precursor M-CSF 24H | wild-type osteoclast M-CSF RANKL 24H | OCU |
15 | GSE72846 | GPL17021 | Control | MMP9 KO | OCD |
16 | GSE135479 | GPL21103 | RANKL | FOXO3 RANKL | OCU |