Fig. 3
From: Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
Phylogenetic tree of Trichoderma simmonsii GH-Sj1. Orthologous genes were identified by OrthoMCL. Each orthologous group aligned by MUSCLE was concatenated, and a maximum likelihood tree was generated by RAxML. Divergence time was estimated using MEGA with Fusarium oxysporum as an out-group. The resulting tree topology was visualized via iTOL online (https://itol.embl.de). The tree scale is in million years ago (MYA). T. simmonsii forms monophyletic groups with Harzianum clade: T. guizhouense, T. lentiforme, and T. harzianum along with the Virens clade: T. virens