Table 4 COG functional category distribution of Trichoderma spp. Each number in parentheses is relative abundance. The highest value for each COG category is in bold
From: Telomere-to-telomere genome assembly of asparaginase-producing Trichoderma simmonsii
| Â | T. asperellum | T. atroviride | T. citrinoviride | T. gamsii | T. guizhouense | T. harzianum | T. lentiforme | T. longibrachiatum | T. parareesei | T. reesei | T. simmonsii | T. virens |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
(A) RNA processing and modification | 315 (2.51) | 322 (2.73) | 323 (3.32) | 313 (2.80) | 324 (2.88) | 328 (2.33) | 313 (2.41) | 313 (2.86) | 316 (3.49) | 314 (3.45) | 352 (2.54) | 329 (2.65) |
(B) Chromatin structure and dynamics | 204 (1.62) | 204 (1.73) | 184 (1.89) | 205 (1.84) | 213 (1.89) | 239 (1.70) | 230 (1.77) | 172 (1.57) | 177 (1.95) | 173 (1.90) | 261 (1.88) | 223 (1.80) |
(C) Energy production and conversion | 387 (3.08) | 389 (3.29) | 321 (3.30) | 393 (3.52) | 435 (3.86) | 454 (3.23) | 435 (3.35) | 297 (2.72) | 307 (3.39) | 308 (3.38) | 474 (3.42) | 414 (3.34) |
(D) Cell cycle control, cell division, chromosome partitioning | 171 (1.36) | 186 (1.57) | 174 (1.79) | 169 (1.51) | 180 (1.60) | 176 (1.25) | 168 (1.29) | 171 (1.56) | 176 (1.94) | 170 (1.87) | 192 (1.38) | 190 (1.53) |
(E) Amino acid transport and metabolism | 500 (3.98) | 478 (4.05) | 436 (4.48) | 477 (4.27) | 549 (4.88) | 583 (4.15) | 554 (4.27) | 412 (3.77) | 412 (4.55) | 411 (4.51) | 641 (4.62) | 540 (4.35) |
(F) Nucleotide transport and metabolism | 125 (1.00) | 130 (1.10) | 115 (1.18) | 131 (1.17) | 131 (1.16) | 145 (1.03) | 141 (1.09) | 113 (1.03) | 113 (1.25) | 116 (1.27) | 158 (1.14) | 138 (1.11) |
(G) Carbohydrate transport and metabolism | 642 (5.11) | 636 (5.38) | 502 (5.16) | 628 (5.62) | 666 (5.92) | 691 (4.91) | 670 (5.16) | 488 (4.46) | 492 (5.43) | 485 (5.32) | 745 (5.37) | 687 (5.54) |
(H) Coenzyme transport and metabolism | 221 (1.76) | 213 (1.80) | 194 (1.99) | 213 (1.91) | 236 (2.10) | 240 (1.71) | 235 (1.81) | 194 (1.77) | 191 (2.11) | 191 (2.10) | 282 (2.03) | 230 (1.85) |
(I) Lipid transport and metabolism | 386 (3.07) | 372 (3.15) | 337 (3.46) | 365 (3.27) | 392 (3.48) | 402 (2.86) | 393 (3.03) | 310 (2.84) | 313 (3.45) | 313 (3.44) | 430 (3.10) | 410 (3.30) |
(J) Translation, ribosomal structure and biogenesis | 381 (3.03) | 390 (3.30) | 375 (3.85) | 375 (3.36) | 398 (3.54) | 402 (2.86) | 387 (2.98) | 360 (3.29) | 363 (4.01) | 361 (3.96) | 434 (3.13) | 397 (3.20) |
(K) Transcription | 363 (2.89) | 362 (3.06) | 323 (3.32) | 357 (3.20) | 377 (3.35) | 403 (2.87) | 381 (2.94) | 318 (2.91) | 312 (3.44) | 307 (3.37) | 462 (3.33) | 373 (3.01) |
(L) Replication, recombination and repair | 255 (2.03) | 265 (2.24) | 241 (2.48) | 265 (2.37) | 268 (2.38) | 288 (2.05) | 284 (2.19) | 232 (2.12) | 234 (2.58) | 222 (2.44) | 325 (2.34) | 279 (2.25) |
(M) Cell wall/membrane/envelope biogenesis | 142 (1.13) | 162 (1.37) | 96 (0.99) | 150 (1.34) | 156 (1.39) | 164 (1.17) | 168 (1.29) | 97 (0.89) | 109 (1.20) | 93 (1.02) | 182 (1.31) | 169 (1.36) |
(N) Cell motility | 5 (0.04) | 5 (0.04) | 5 (0.05) | 5 (0.04) | 5 (0.04) | 5 (0.04) | 5 (0.04) | 5 (0.05) | 5 (0.06) | 5 (0.05) | 6 (0.04) | 5 (0.04) |
(O) Posttranslational modification, protein turnover, chaperones | 610 (4.86) | 634 (5.37) | 560 (5.75) | 619 (5.54) | 634 (5.63) | 650 (4.62) | 612 (4.72) | 548 (5.01) | 548 (6.05) | 536 (5.88) | 713 (5.14) | 634 (5.11) |
(P) Inorganic ion transport and metabolism | 267 (2.13) | 256 (2.17) | 241 (2.48) | 248 (2.22) | 279 (2.48) | 285 (2.03) | 285 (2.20) | 234 (2.14) | 237 (2.62) | 237 (2.60) | 313 (2.26) | 290 (2.34) |
(Q) Secondary metabolites biosynthesis, transport and catabolism | 550 (4.38) | 538 (4.55) | 418 (4.29) | 544 (4.87) | 654 (5.81) | 681 (4.84) | 671 (5.17) | 400 (3.66) | 400 (4.41) | 407 (4.47) | 755 (5.44) | 662 (5.34) |
(S) Function unknown | 2790 (22.22) | 2853 (24.15) | 2433 (24.99) | 2764 (24.74) | 2865 (25.46) | 3168 (22.52) | 3004 (23.15) | 2338 (21.38) | 2343 (25.86) | 2305 (25.30) | 3293 (23.73) | 3105 (25.03) |
(T) Signal transduction mechanisms | 358 (2.85) | 368 (3.11) | 362 (3.72) | 348 (3.12) | 373 (3.31) | 388 (2.76) | 372 (2.87) | 337 (3.08) | 342 (3.77) | 338 (3.71) | 424 (3.06) | 397 (3.20) |
(U) Intracellular trafficking, secretion, and vesicular transport | 469 (3.73) | 475 (4.02) | 446 (4.58) | 469 (4.20) | 497 (4.42) | 486 (3.46) | 481 (3.71) | 415 (3.80) | 432 (4.77) | 424 (4.65) | 561 (4.04) | 484 (3.90) |
(V) Defense mechanisms | 56 (0.45) | 68 (0.58) | 41 (0.42) | 71 (0.64) | 82 (0.73) | 93 (0.66) | 84 (0.65) | 37 (0.34) | 38 (0.42) | 39 (0.43) | 91 (0.66) | 69 (0.56) |
(W) Extracellular structures | 7 (0.06) | 6 (0.05) | 5 (0.05) | 6 (0.05) | 6 (0.05) | 8 (0.06) | 7 (0.05) | 5 (0.05) | 5 (0.06) | 5 (0.05) | 8 (0.06) | 4 (0.03) |
(Y) Nuclear structure | 27 (0.22) | 26 (0.22) | 27 (0.28) | 27 (0.24) | 27 (0.24) | 28 (0.20) | 27 (0.21) | 26 (0.24) | 26 (0.29) | 26 (0.29) | 32 (0.23) | 28 (0.23) |
(Z) Cytoskeleton | 129 (1.03) | 136 (1.15) | 121 (1.24) | 137 (1.23) | 137 (1.22) | 141 (1.00) | 133 (1.02) | 118 (1.08) | 121 (1.34) | 119 (1.31) | 154 (1.11) | 148 (1.19) |