Table 2 Quality statistics of reads after filtering
Sample | Total raw reads (Mb) | Total clean reads (Mb) | Total clean bases (Gb) | Clean reads Q20 (%) | Clean reads Q30 (%) | Clean reads ratio (%) | GC percent (%) |
|---|---|---|---|---|---|---|---|
CAA1 | 47.76 | 46.76 | 7.01G | 97.83 | 93.95 | 97.91 | 43.86 |
CAA2 | 47.33 | 46.41 | 6.96G | 97.88 | 94.06 | 98.06 | 43.95 |
CAA3 | 47.38 | 46.46 | 6.97G | 97.87 | 94.06 | 98.06 | 44.01 |
CAB1 | 46.68 | 45.90 | 6.89G | 97.90 | 94.09 | 98.33 | 43.19 |
CAB2 | 45.95 | 45.10 | 6.76G | 97.93 | 94.15 | 98.15 | 43.57 |
CAB3 | 46.86 | 45.99 | 6.90G | 97.76 | 93.80 | 98.14 | 43.12 |
CAC1 | 50.39 | 49.32 | 7.40G | 97.13 | 92.46 | 97.88 | 43.50 |
CAC2 | 48.64 | 47.79 | 7.17G | 97.94 | 94.18 | 98.25 | 44.21 |
CAC3 | 47.35 | 46.33 | 6.95G | 97.81 | 93.92 | 97.85 | 43.75 |
CAK1 | 45.74 | 44.63 | 6.69G | 97.92 | 94.13 | 97.57 | 43.83 |
CAK2 | 44.85 | 43.83 | 6.57G | 97.77 | 93.80 | 97.73 | 43.91 |
CAK3 | 46.76 | 45.85 | 6.88G | 97.87 | 93.99 | 98.05 | 43.78 |