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Fig. 1 | BMC Genomics

Fig. 1

From: Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

Fig. 1

Positioning and abundance of TEs nearby protein-coding genes. A) Three genomic positionings of TEs relative to genes were considered: “upstream” contains TEs within 1 kb upstream of the gene, “downstream” contains those within 1 kb downstream of the gene, and “intron” contains TEs within introns. Only the transposon boundary closest to the gene was considered for this classification. B) Well-defined TE superfamilies (TEFs) adjacent to protein-coding genes in A. thaliana and the proportion of gene-proximal TEs they hold. ‘Rest’ indicates the sum of Mariner, ATDNA12T3_2, Tc1 and ATREP18 TEFs. C) Well-defined TE superfamilies (TEFs) adjacent to protein-coding genes in S. lycopersicum and the proportion of gene-proximal TEs they hold. ‘Rest’ indicates the sum of Mariner, Retrotransposon, Helitron and TRIM_LARD TEFs

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BMC Genomics

ISSN: 1471-2164

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