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Table 3 Most significant cis-regulatory motifs detected de novo by RSAT peak-motifs in TE sequences adjacent to stress-responsive genes in S. lycopersicum

From: Nearby transposable elements impact plant stress gene regulatory networks: a meta-analysis in A. thaliana and S. lycopersicum

  1. We only analyzed sequences of enriched TEF members near stress-responsive genes in a specific genomic positioning (upstream, intron, downstream). All other TE sequences in the same genomic positioning were taken as background. Detected motifs were compared to the motif databases Cistrome, footprintDB-plants, JASPAR core non-redundant plants and cisBP. Only most significant sequence logo(s) are displayed. N.S. = non-significant
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BMC Genomics

ISSN: 1471-2164

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