Table 1 Accession numbers and features of the eight Rubus plastomes in the present study
From: Complete chloroplast genomes of Rubus species (Rosaceae) and comparative analysis within the genus
Species | Accession no. | Clean reads | Reads used in assembly | Mean coverage of base (X) | Complete | LSC | SSC | IR | CDS | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Length (bp) | GC (%) | Length (bp) | GC (%) | Length (bp) | GC (%) | Length (bp) | GC (%) | Length (bp) | GC (%) | |||||
Rubus tephrodes | MT478113 | 8,969,158,800 | 8,367,934 | 600 | 156,217 | 37.2 | 85,805 | 35.1 | 18,830 | 31.2 | 25,791 | 42.8 | 78,876 | 38 |
R. coreanus | MT478114 | 8,545,216,200 | 8,077,463 | 620 | 155,785 | 37.3 | 85,028 | 35.2 | 18,769 | 31.3 | 25,994 | 42.8 | 77,404 | 38 |
R. trianthus | MT478115 | 9,832,178,700 | 7,522,556 | 1229 | 155,546 | 37.0 | 85,305 | 34.9 | 18,719 | 30.9 | 25,761 | 42.8 | 78,838 | 37.8 |
R. lambertianus | OK127886 | 3,497,807,100 | 20,149,705 | 914 | 156,321 | 37.2 | 85,883 | 35.1 | 18,874 | 31.2 | 25,782 | 42.8 | 78,870 | 38 |
R. hirsutus | OK127882 | 3,625,125,600 | 13,222,835 | 823 | 156,020 | 37.3 | 85,784 | 34.8 | 18,710 | 31 | 25,763 | 42.9 | 79,212 | 37.8 |
R. parvifolius | OK127884 | 3,611,559,900 | 11,723,986 | 915 | 155,906 | 37.3 | 85,125 | 35.2 | 18,749 | 31.4 | 26,016 | 42.8 | 78,960 | 38 |
R. hunanensis | OK127885 | 3,521,878,500 | 8,434,742 | 865 | 156,217 | 37.2 | 85,806 | 35.1 | 18,831 | 31.2 | 25,790 | 42.8 | 78,369 | 38 |
R. innominatus | OK127883 | 3,408,285,600 | 12,384,841 | 831 | 155,874 | 37.0 | 85,094 | 35.2 | 18,795 | 31.3 | 25,993 | 42.8 | 78,966 | 38 |