Skip to main content

Table 1 Identification of SbHDAC gene family members

From: Characterization of histone deacetylases and their roles in response to abiotic and PAMPs stresses in Sorghum bicolor

Gene Name

Accession Number

Chr

Range

CDS (bp)

Protein (aa)

Molecular weight (kDa)

PI

Subcellular localization

SbHDA1

LOC110432512

2

4,103,729 ~ 4,115,614

1905

634

68.29599

5.68

Nucleus

SbHDA2

LOC8060653

2

72,626,015 ~ 72,634,000

2112

703

76.72727

5.78

Chloroplast. Nucleus.

SbHDA3

LOC8079300

3

52,802,297 ~ 52,806,221

1404

467

51.90450

5.78

Nucleus

SbHDA4

LOC8085432

3

66,687,911 ~ 66,692,549

1203

430

46.69788

6.13

Nucleus

SbHDA5

LOC8082952

4

7,759,256 ~ 7,763,600

1551

516

57.75734

5.29

Nucleus

SbHDA6

LOC8085534

4

8,149,916 ~ 8,155,266

1059

352

38.76319

5.51

Chloroplast. Nucleus.

SbHDA7

LOC8056459

5

10,412,638 ~ 10,414,364

1077

358

38.86902

9.08

Nucleus

SbHDA8

LOC8075265

6

42,785,502 ~ 42,802,511

1344

447

50.82971

6.55

Cytoplasm. Nucleus

SbHDA9

LOC8073075

7

47,337,650 ~ 47,352,155

1377

458

50.95214

5.43

Cytoplasm. Nucleus.

SbHDA10

LOC8058527

9

50,989,573 ~ 50,993,387

1173

390

42.25157

5.49

Nucleus

SbHDA11

LOC8079300

10

50,823,203 ~ 50,827,657

1053

350

38.61221

6.01

Chloroplast. Nucleus.

SbHDA12

LOC8065038

10

51,422,040 ~ 51,430,431

1557

518

57.76654

5.48

Cytoplasm. Nucleus.

SbHDT1

LOC8078709

3

70,646,814 ~ 70,650,720

810

269

29.54679

5.56

Nucleus

SbHDT2

LOC8078710

3

70,659,296 ~ 70,662,320

834

277

29.70739

5.02

Nucleus

SbHDT3

LOC8068982

9

55,768,231 ~ 55,771,439

900

299

32.30415

4.64

Nucleus

SbHDT4

LOC8066575

9

59,367,712 ~ 59,370,487

924

307

33.37051

4.80

Nucleus

SbHDT5

LOC8065099

10

58,010,970 ~ 58,014,442

1461

486

52.29158

7.92

Nucleus

SbSRT1

LOC110436344

6

48,919,950 ~ 48,935,447

1431

476

53.23976

8.88

Chloroplast

SbSRT2

LOC8076304

8

6,041,680 ~ 6,047,145

1455

484

53.66489

9.17

Chloroplast

  1. E-value≤1 × 10−5 was used to identify the HDAC gene family members in sorghum as the minimum threshold