Condition | No. unique DETs | ID | P. radiata code | Gene name | Predicted gene function | Direction |
---|---|---|---|---|---|---|
T7-B-MJ | 96 | U1 | NZPradTrx115883_C02 | granule bound starch synthase 1a precursor | Involved in the pathway starch biosynthesis https://www.uniprot.org/uniprot/P0C585 | – |
U2 | NZPradTrx184661_C01 | PREDICTED: putative caffeoyl-CoA O-methyltransferase At1g67980-like | Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers https://www.uniprot.org/uniprot/Q9C9W3 | – | ||
U3 | NZPradTrx108036_C04 | Cytochrome b reductase | Required for the NADH-dependent electron transfer involved in the desaturation and hydroxylation of fatty acids and in the desaturation of sterol precursors | – | ||
U4 | NZPradTrx119186_C01 | DEAD-box RNA helicase | Ubiquitous in RNA-mediated processes and function by coupling cycles of ATP binding and hydrolysis to changes in affinity for single-stranded RNA https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3032546/ | – | ||
U6 | NZPradTrx060156_C02 | PREDICTED: probable rhamnose biosynthetic enzyme 1 | Involved with nucleotide-sugar metabolic process https://www.uniprot.org/uniprot/A0A1U7W8H4 | + | ||
U7 | NZPradTrx119948_C01 | PREDICTED: protein HOTHEAD-like | Required to limit cellular interactions between contacting epidermal cells during floral development (Krolikowski et al. 2003) | + | ||
U8 | NZPradTrx119070_C01 | PREDICTED: mitochondrial-processing peptidase subunit alpha-like | Substrate recognition and binding subunit of the essential mitochondrial processing protease (MPP), which cleaves the mitochondrial sequence off newly imported precursors proteins. https://www.uniprot.org/uniprot/P29677 | + | ||
U9 | NZPradTrx110606_C03 NZPradTrx110606_C04 | snakin | Active against fungal and bacterial plant pathogens (Berrocal-Lobo et al. 2002) | – | ||
U10 | NZPradTrx094750_C01 | PREDICTED: zinc finger CCCH domain-containing protein 20-like | Known to play important roles in RNA processing as RNA-binding proteins in animals (Wang et al. 2008) | – | ||
T7-B-strip | 39 | U11 | NZPradTrx111276_C02 | low molecular weight heat-shock protein | Expressed in plants experiencing high-temperature stress (Hernandez and Vierling 1993) | – |
U12 | NZPradTrx109179_C02 | LP3-1 | Shown to be up-regulated in response to water deficit stress and to also act as transcription factors for genes likely involved in hexose transport (Lecoy and GarcÃa-Gil 2020) | – | ||
NZPradTrx077717_C01 | Â | |||||
U13 | NZPradTrx112152_C04 | PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like | Involved in resistance response to the pathogenic oomycetes, promotes hydrogen peroxide production and cell death https://www.uniprot.org/uniprot/Q9LXA5 | + | ||
U14 | NZPradTrx082734_C01 | Casparian strip domain-like gene | Recruit the lignin polymerisation machinery necessary for the deposition of Casparian strips in the endodermis https://www.ebi.ac.uk/interpro/entry/InterPro/IPR006459/ | – | ||
U15 | NZPradTrx105759_C05 | Methyl esterase 13 | Involved in jasmonic and salicylic acid metabolic process https://www.uniprot.org/uniprot/F4IE65 | + | ||
U16 | NZPradTrx042090_C01 | Geranyl diphosphate synthase | Catalyses the condensation of dimethylallyl diphosphate and isopentenyl diphosphate to geranyl diphosphate, the key precursor of monoterpene biosynthesis (Burke et al. 1999) | + | ||
U17 | NZPradTrx064702_C01 | Class II chitinase | Involved in the defence response against pathogen and fungal infection (de A. Gerhardt et al. 1997) | – | ||
U18 | NZPradTrx105720_C01 | Defensin | Inhibits the growth of a broad range of pathogens, including bacteria, fungi and viruses (Ermakova et al. 2016; Picart et al. 2012) [75, 76]. | – | ||
U19 | NZPradTrx119059_C01 | Annexin p33 | Central regulator or effector of plant growth and stress signalling (Mortimer et al. 2008) | – | ||
U20 | NZPradTrx118949_C01 | Peroxiredoxin | Guardian against oxidative stress and modulator of peroxide signalling (Perkins et al. 2015) | – | ||
T7-N-MJ | 751 | U21 | NZPradTrx110565_C01 | UDP-sulfoquinovose synthase | Involved in the biosynthesis of sulfolipids found in thylakoid membranes. Converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose https://www.uniprot.org/uniprot/O48917 | – |
U22 | NZPradTrx064995_C02 | Chloroplast ribulose bisphosphate carboxylase/oxygenase activase alpha1, partial | Catalyses carboxylation of RuBP in the first step of the Calvin cycle of photosynthesis (Tabita 1999) | – | ||
U23 | NZPradTrx088104_C02 | RNA polymerase sigma factor rpoD, putative | Initiation factor that promotes the attachment of RNA polymerase to specific initiation sites https://www.uniprot.org/uniprot/P00579 | – | ||
U24 | NZPradTrx081803_C01 | PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein-like | Mediates the transport of acylcarnitines of different length across the mitochondrial inner membrane from the cytosol to the mitochondrial matrix for their oxidation by the mitochondrial fatty acid-oxidation pathway https://www.uniprot.org/uniprot/O43772 | – | ||
U25 | NZPradTrx086144_C02 | Chloroplast omega-6 fatty acid desaturase | Introduces the second double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol https://www.uniprot.org/uniprot/P46312 | – | ||
U26 | NZPradTrx065194_C01 | Glutamate--ammonia ligase | Key enzyme of ammonium assimilation and recycling in plants where it catalyses the synthesis of glutamine from ammonium and glutamate (Lothier et al. 2011) | – | ||
U27 | NZPradTrx077590_C01 | PREDICTED: ATP synthase gamma chain, chloroplastic-like | Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF0 complex https://www.uniprot.org/uniprot/Q01908 | – | ||
U28 | NZPradTrx064646_C01 | PREDICTED: photosystem I reaction center subunit XI, chloroplastic-like | Involved in photosynthesis https://www.uniprot.org/uniprot/Q41385 | – | ||
U29 | NZPradTrx115121_C05 | glutathione peroxidase-like protein, partial | Protects cells from phospholipid hydroperoxides and nonphospholipid peroxides during oxidative stress https://www.uniprot.org/uniprot/P36014 | + | ||
U30 | NZPradTrx186664_C01 | F353614_1 senescence-associated protein SPA15 | May be involved in the regulation of leaf senescence | – | ||
T14-B-MJ | 18 | U31 | NZPradTrx192941_C01 | Beta-amylase | Involved in starch breakdown in plants (Kaplan and Guy 2004) | + |
U32 | NZPradTrx076831_C01 | UV-B receptor 1 | Involved in response to UV-B (Loyola et al. 2016) | + | ||
U33 | NZPradTrx044917_C01 | Putative cyclophilin | Involved in various physiological processes including transcriptional regulation, organogenesis, photosynthetic and hormone signalling pathways, stress adaptation and defence responses (Barbosa dos Santos and Park 2019) | – | ||
U34 | NZPradTrx119079_C01 | Xyloglucan endotransglucosylase/hydrolase 13 | Cleaves xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. https://www.uniprot.org/uniprot/Q9FKL8 | – | ||
U35 | NZPradTrx037564_C01 | PREDICTED: bidirectional sugar transporter SWEET3-like | Mediates both low-affinity uptake and efflux of sugar across the plasma membrane https://www.uniprot.org/uniprot/Q6NQN5 | – | ||
U36 | NZPradTrx118938_C01 | Glycine-rich RNA-binding protein | Plays a role in RNA transcription or processing during stress. Binds RNAs and DNAs sequence with a preference to single-stranded nucleic acids. https://www.uniprot.org/uniprot/Q03250 | – | ||
U37 | NZPradTrx109658_C01 | Probable aquaporin | Involved in transport of water and other small neutral molecules across cellular biological membranes (Kapilan et al. 2018) | – | ||
U38 | NZPradTrx094541_C02 | PREDICTED: methionine gamma-lyase-like | Involved in amino acid catabolism (Ravanel et al. 1998) | + | ||
T14-B-strip | 12 | U39 | NZPradTrx119456_C01 | PR10-1.13 | Involved in defence against pathogen infection and other environmental stresses (Liu et al. 2005) | + |
U40 | NZPradTrx098320_C05 | PREDICTED: LOB domain-containing protein 1-like | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP https://www.uniprot.org/uniprot/Q9FKZ3-1 | + | ||
U41 | NZPradTrx073494_C01 | TPA: putative ARF GTPase-activating domain family protein | Have potential roles in cell migration, central to normal physiology in embryogenesis, the inflammatory response and wound healing (Campa and Randazzo 2008) | – | ||
U42 | NZPradTrx103835_C01 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of terpenoid compounds https://www.uniprot.org/uniprot/P62617 | + | ||
U43 | NZPradTrx102746_C02 | S6 ribosomal protein | Key downstream effector of the target of rapamycin (TOR) kinase pathway that regulates various biological processes, including translation, synthesis of ribosomal proteins, and transcription of rRNA (Kim et al. 2014) | + | ||
U44 | NZPradTrx094959_C01 | Pathogenesis-related protein 10 | Involved in a cell wall rigidification to signal transduction and antimicrobial activity (Liu and Ekramoddoullah 2006) | + | ||
U45 | NZPradTrx096309_C03 | Dirigent-like protein | Predominant roles in defence responses, secondary metabolism, and fiber biosynthesis (Li et al. 2017) | + | ||
U46 | NZPradTrx105315_C01 | PREDICTED: uncharacterized LOC101219508 |  | – | ||
U47 | NZPradTrx077043_C01 | FAD/NAD(P)-binding oxidoreductase domain-containing protein | Catalyses a wide variety of redox reactions with many different substrates (Sellés Vidal et al. 2018) | – | ||
U48 | NZPradTrx110593_C01 | PREDICTED: chaperonin CPN60-2, mitochondrial-like | Implicated in mitochondrial protein import and macromolecular assembly. May facilitate the correct folding of imported proteins. May also prevent misfolding and promote the refolding and proper assembly of unfolded polypeptides generated under stress conditions in the mitochondrial matrix. https://www.uniprot.org/uniprot/Q05046 | + | ||
T14-N-MJ | 30 | U49 | NZPradTrx118421_C03 | Caffeic acid O-methyltransferase | Catalyses the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins https://www.uniprot.org/uniprot/Q06509 | + |
U50 | NZPradTrx079649_C05 | Geranyl diphosphate synthase | Catalyses the condensation of dimethylallyl diphosphate and isopentenyl diphosphate to geranyl diphosphate, the key precursor of monoterpene biosynthesis (Burke et al. 1999) | + | ||
NZPradTrx079649_C03 | Â | |||||
NZPradTrx079649_C02 | Â | |||||
U51 | NZPradTrx122822_C01 | PREDICTED: F-box protein GID2-like | Essential component of the SCF-type E3 ligase complex, SCF(GID2), a complex that positively regulates the gibberellin signalling pathway https://www.uniprot.org/uniprot/Q9STX3 | + | ||
U52 | NZPradTrx083848_C01 | Chlorophyllase | The first enzyme involved in chlorophyll (Chl) degradation and catalyses the hydrolysis of ester bond to yield chlorophyllide and phytol (Tsuchiya et al. 1999) | + | ||
U53 | NZPradTrx103321_C01 | Phenylalanine ammonia-lyase | Phenylalanine aminomutase that catalyses the rearrangement of L-phenylalanine to R-beta-phenylalanine. Catalyses the first committed step in the biosynthesis of the side chain of the alkaloid taxol (paclitaxel) https://www.uniprot.org/uniprot/Q68G84 | + | ||
U54 | NZPradTrx071573_C01 | Starch synthase isoform II | Contributes to the extension of glucan chains in the synthesis of starch (Edwards et al. 1999) | + | ||
U55 | NZPradTrx105898_C01 | Glutamate-1-semialdehyde 2,1-aminomutase | Essential enzyme in the pathway that leads to the synthesis of chlorophyll and other tetrapyrroles in plants and some bacteria (Tyacke et al. 1995) | – | ||
U56 | NZPradTrx182827_C01 | PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like | Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defence response to pathogen-associated molecular patterns (PAMPs) https://www.uniprot.org/uniprot/Q9FL28 | + | ||
U57 | NZPradTrx184681_C01 | FK506 binding-like protein | Involved in diverse cellular functions including protein folding, cellular signalling, apoptosis and transcription (Tong and Jiang 2016) | + | ||
U58 | NZPradTrx094486_C01 | Putative UDP-glucose:flavonoid glucosyltransferase | Enhances the solubility of anthocyanins (Chen et al. 2011) | + | ||
T21-B-MJ | 4 | U59 | NZPradTrx083714_C01 | PREDICTED: protein GLUTAMINE DUMPER 1-like | Involved in the regulation of amino acid metabolism, in the salicylic acid (SA) pathway and in the geminivirus-host interaction | + |
U60 | NZPradTrx053990_C01 | PREDICTED: cytochrome P450 71A1-like | Involved in the metabolism of compounds associated with the development of flavour in the ripening fruit process, possibly by acting as trans-cinnamic acid 4-hydrolase https://www.uniprot.org/uniprot/P24465 | + | ||
U61 | NZPradTrx105443_C01 | GMP synthase [glutamine-hydrolyzing] subunit A, putative | Involved in de novo biosynthesis of guanosine nucleotides https://www.brenda-enzymes.org/enzyme.php?ecno=6.3.5.2 | + | ||
U62 | NZPradTrx112236_C01 | Laccase | Involved in phenolic metabolism and functioning of cell wall (Ranocha et al. 2002) | + | ||
T21-B-S | 13 | U63 | NZPradTrx087634_C02 | Properoxidase | Involved in lignification, cell elongation, stress defence and seed germination (Shigeto and Tsutsumi 2016) | + |
U64 | NZPradTrx103699_C01 | Oxidoreductase, 2OG-Fe(II) oxygenase family protein | Involved in defence against pathogens (Van Damme et al. 2008) | + |