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Table 4 Number and classification of differentially expressed genes (n. DEG) by diet, SCD genotype and dietary vitamin A by SCD genotype groups

From: Transcriptome shifts triggered by vitamin A and SCD genotype interaction in Duroc pigs

Factor

Comparison

n. DEG

coding

lncRNAa

pseudogene

snoRNA

miRNA

MT tRNA

Diet

VA+ vs VA-

43

27

10

 

3

3

1

SCD

TT vs CC

24

17

7

 

1

  

Diet in SCD_TT genotype

TT_VA+ vs TT_VA-

162

134

22

3

1

1

1

Diet in SCD_CC genotype

CC_VA+ vs CC_VA-

26

21

1

1

1

1

1

SCD genotype in VA+ diet

TT_VA+ vs CC_VA+

73

59

13

 

1

  

SCD genotype in VA- diet

TT_VA- vs CC_VA-

8

7

  

1

  
  1. alncRNA long non-coding RNA, pseudogene transcribed pseudogene, snoRNA small nucleolar RNA, miRNA microRNA, MT tRNA mitochondrial transference RNA