Table 5 Regulators predicted for the set of annotated coding differentially expressed genes
From: Transcriptome shifts triggered by vitamin A and SCD genotype interaction in Duroc pigs
Transcription factor | n | Genes |
|---|---|---|
HMGA1 | 13 | ACTC1; CGGBP1; CNST; FBXO33; IREB2; MPI; MTTP; NEGR1; PCDHGA6; PDE4D; PPM1D; PTX3; TBXAS1 |
HNF1A | 12 | ADPRH; AGK; COL17A1; ECE1; GPX2; ITGAL; NAV2; PYCARD; RNF122; STARD8; TBXAS1; TRAK2 |
HNF4A | 25 | ABCA1; AURKB; C12ORF49; CDK23; CGGBP1; CORO1A; CRYBB3; CYB561D1; ECE1; ECHDC2; GPX2; IMPAD1; IRX3; MTTP; NAV2; NECAP2; OTOGL; PPM1D; SAFB2; SCD; SFXN2; SLC9A8; STARD8; TIMP1; TRAK2 |
IRF2 | 25 | ADPRH; ARHGEF37; COX15; DFFA; EIF1B; FGF10; FGG; GALR1; GPR35; HABP2; HNMT; IMPAD1; ITGAL; LIX1; MTTP; NEGR1; PEX6; PPM1D; PTX3; RGS9; RMND5B; SCD; SGSM1; TTPAL; ZFPL1 |
PPARA | 3 | BAZ1B; RARRES1; TIMP1 |
PPARG | 26 | ADCK5; AGK; C16ORF58; CNST; CORO1A; CYB561D1; ECE1; FUS; GPR68; HABP2; IP6K2; ITGAL; KANK3; KIAA0355; MYO3B; NECAP2; PDE4D; PITX2; PRMT3; PTX3; RARRES1; RYK; SCD; TMEM39B; VPS25; ZRANB1 |
RARA | 19 | ADCY10; AURKB; CORO1A; GPR68; HABP2; ITGAL; KANK3; KIAA0355; MTTP; MYO3B; NCF1; NECAP2; PRMT3; PTX3; RMND5B; SCD; SH2D3A; TMEM42; TTPAL |
RXRA | 14 | ACTC1; BAZ1B; CORO1A; EXOSC1; FGF10; GPIHBP1; GSTO2; KIAA0355; PEX6; PRMT3; PYCARD; RARRES1; TMEM42; VPS25 |
SREBF1 | 34 | AADAC; ABCA1; ACTC1; CACNA1l; CDK13; COL17A1; CORO1A; DFFA; DNER; ECE1; FGG; FUS; HK2; IP6K2; KANK3; LIX1; LRTM1; MORN4; MTTP; MVK; NAV2; NECAP2; PDE4D; PDE6D; PDZD8; PRMT3; RARRES1; RASA3; RGS9; SH2D3A; TIMP1; TMPRSS13; TNK2; ZFPL1 |
SREBF2 | 10 | AADAC; ARHGEF37; IGFBP4; IP6K2; ITGB2; LZIC; NAV2; SLC12A9; TNK2; VPS25 |