Table 1 Novel candidate genes co-localizing with QTL in the Dw3 region on chromosome 7
Sorghum gene id | Sorghum gene description | Layer comparison | Co-localizing QTLa | Rice homolog | Rice homolog description |
|---|---|---|---|---|---|
Candidates downstream of Dw3 | |||||
Sobic.007G165800 | BAHD acyltransferase DCR | MvsL UvsL | QLANG7.10 QLANG7.11 QLANG7.12 QLANG7.13 1.67Mb_GR qP3-L4/L5–7.2 | Os08g0562500 (E value: 0.0, Identity: 84.7%) | - BAHD acyltransferase-like protein. - Slender Grain (SLG). - Control of grain size and leaf angle. - Regulation of BR homeostasis. |
Sobic.007G166900 | WALLS ARE THIN 1 (WAT1) EamA-like transporter family | MvsL UvsL | QLANG7.10 QLANG7.11 QLANG7.12 QLANG7.13 1.67Mb_GR qP3-L4/L5–7.2 | Os08g0561500 (E value: 7e-141, Identity: 84.0%) | - WALLS ARE THIN 1 (WAT1) - Similar to nodulin-like protein 5NG4 - Usually Multiple Acids Move In and out Transporter 12: OsUMAMIT12) |
Sobic.007G175600 | Small auxin up-regulated RNA (SAUR) 36. | MvsL UvsL | QLANG7.10 QLANG7.11 QLANG7.12 QLANG7.13 1.67Mb_GR qP3-L4/L5–7.1 | Os08g0550700 (E value: 9e-64, Identity: 71.4%) | Similar to Auxin induced protein (OsSAUR36) |
Candidates upstream of Dw3 | |||||
Sobic.007G153001 | Potassium ion (K+) transporter | UvsM MvsL UvsL | QLANG7.10 | Os08g0466200 (E value: 0.0, Identity: 86.1%) | Similar to KUP-related potassium transporter (OsHAK4) |
Sobic.007G160400 | Zinc-finger homeodomain protein 2 | UvsL | QLANG7.4 QLANG7.5 QLANG7.10 QLANG7.11 QLANG7.12 QLANG7.13 1.67Mb_GR qP2-PFL/L4–7.1 | Os08g0479400 (LOC_Os08g37400) (OsZHD2). (E value: 6e-174, Identity: 83.4%) | Similar to Hydroxyproline-rich glycoprotein DZ-HRGP precursor. Zinc-finger homeodomain protein 2-like (LOC4345845), mRNA) |