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Fig. 3 | BMC Genomics

Fig. 3

From: Genome-wide identification and expression analysis of the coronatine-insensitive 1 (COI1) gene family in response to biotic and abiotic stresses in Saccharum

Fig. 3

Protein motif and gene structure of SbCOI1, ShCOI1, and SsCOI1 genes. SbCOI1, ShCOI1, and SsCOI1 represented the COI1 gene in Sorghum bicolor, Saccharum spp. hybrid cultivar R570, and S. spontaneum, respectively. The clustering tree on the left side of the figure was constructed using the maximum likelihood method (JTT + G model, complete deletion, and 1000 bootstrap replicates) using MEGA 6.60, and three evolutionary groups (group A, group B, and group D) were shown in different colors. Motifs were identified using Multiple Em for Motif Elicitation. Motif 1–10 was represented by different colored squares. Details of the individual motifs were shown in Supplementary Table S6. The yellow box, blue box, and black line in the gene structures represented exons, untranslated regions (UTR), and introns, respectively. The sizes of motifs, exons, and introns can be estimated using the scale below

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