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Table 3 Previously reported fertility-associated QTL regions which overlap significant SNP identified for beef bull semen attributes in this study

From: Genome-wide association study of beef bull semen attributes

Trait

SNP Name

rsID

Chr:Position

QTL Trait

Source

Volume

BTB-01549373

No rsID

2: 81679350

Conception rate

[39]

Non-return rate

[9]

Hapmap49899-BTA-18490

rs41575945

27:3495048

Non-return rate

[10]

Number of Spermatozoa

BTA-110980-no-rs

rs41618035

1:31173269

Conception rate

[40]

Inseminations per conception

[11]

Non-return rate

[11]

ARS-BFGL-NGS-101891

rs109740774

6:75137290

First service conception

[39]

Hapmap33368-BTA-146079

rs43567728

8: 89743053

Conception rate

[39]

Hapmap44146-BTA-83959

rs41661101

9:50922485

Non-return rate

[41]

Structural soundness of feet, legs, penis, and prepuce

[42]

ARS-BFGL-NGS-101386

rs110190516

17: 67017094

Non-return rate

[43]

ARS-BFGL-NGS-85970

rs108993490

24:16118203

First service conception rate

[39]

Conception rate

[39]

Initial Motility

ARS-BFGL-NGS-74920

rs109798673

2: 827626

Conception rate

[39]

Fertilization rate

[38]

BTB-00319289

rs43526428

7:73777772

Conception rate

[39, 44]

Daughter pregnancy rate

[21, 44]

Sire conception rate

[45]

Sexual precocity

[45]

Hapmap59148-ss46527122

rs29003479

11:63430172

Scrotal circumference

[46]

Hapmap23061-BTC-074055

rs109512383

25: 30964321

Conception rate

[39]

Scrotal circumference

[46]

Sperm average path velocity

[12]

Post-thaw Motility

ARS-BFGL-NGS-74920

rs109798673

2:827626

Conception Rate

[39]

Fertilization Rate

[38]

Hapmap45703-BTA-105835

rs41611445

2: 82083660

Conception rate

[39]

Non-return rate

[9]

BTB-01537954

rs42653645

11:25036830

Sperm motility

[12, 16]

Three-hour Post-thaw Motility

Hapmap59148-ss46527122

rs29003479

11: 63430172

Scrotal circumference

[46]

Percentage of Normal Spermatozoa

BTA-50285-no-rs

rs41606310

1: 7669386

Daughter pregnancy rate

[22]

ARS-BFGL-NGS-43775

rs110964837

2:73209337

Conception rate

[12, 17, 39]

Non-return rate

[9]

ARS-BFGL-NGS-25359

rs109928164

5: 70049126

Daughter pregnancy rate

[17]

BTA-74480-no-rs

rs41591913

5:84578337

Conception Rate

[17]

BTA-98744-no-rs

rs41666416

10: 68089016

Fertility index

[23]

Scrotal circumference

[47]

Primary Abnormalities

BTA-115758-no-rs

rs41566683

1: 36903496

Conception rate

[39, 40]

Hapmap57078-ss46526391

rs41255529

1:60956897

Conception rate

[39, 40]

First service conception

[39]

Non-return rate

[9]

Scrotal circumference

[46]

ARS-BFGL-NGS-44433

rs110487590

1: 63799085

Conception rate

[17, 40]

Daughter pregnancy rate

[17]

Non-return rate

[9]

Scrotal circumference

[46]

Testicular hypoplasia

[48]

BTB-01831345

rs42940192

4:10648384

Non-return rate

[49, 50]

Male fertility

[51]