Table 4 Significant SNP with putative candidate genes for semen production traits
From: Genome-wide association study of beef bull semen attributes
SNP | Trait | Chromosome: Pos | Closest gene | Biological Process | Distance from gene (bp) | Relative Location of SNP to gene |
|---|---|---|---|---|---|---|
rs109798673 | Initial Motility | 2:827626 | HERC2 | Causes reduced spermatozoa motility | 0 | Within |
Initial Motility | 2:827626 | OCA2 | Contributes to spermatid development | 196,400 | Downstream | |
Post-thaw Motility | 2:827626 | HERC2 | Caused reduced spermatozoa motility | 0 | Within | |
Post-thaw Motility | 2:827626 | OCA2 | Contributes to spermatid development | 196,400 | Downstream | |
rs110425782 | Primary Abnormalities | 20:68324872 | LOC101902976 | Necessity for sperm motility | 108,733 | Downstream |