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Fig. 4 | BMC Genomics

Fig. 4

From: Long range PCR-based deep sequencing for haplotype determination in mixed HCMV infections

Fig. 4

Nucleotide variation between genotype and haplotype sequences of region gN. A depiction of the polymorphic region F3 (7.7 kb) can be seen on the top. While annotated CDS are depicted with grey arrows, genotypes gN (UL73) and gO (UL74), for short read sequencing, can be seen in dark blue. The respective gN region of three haplotype sequences and two gN genotype sequences were aligned. Ambiguous nucleotides are depicted in violet. Red boxes indicate the nucleotide differences between hap 1 and hap 2. Alignments were generated in BioEdit version 7.0.1; GT, genotype; BAL, bronchoalveolar lavage; hap, haplotype

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