Fig. 3
From: Panakeia - a universal tool for bacterial pangenome analysis
Zooming in on a chromosomized strain graph of a V. cholerae strain with two chromosomes shows a misassembly in the genome. Blue nodes represent proteins belonging to chromosome 1 and red nodes represent proteins belonging to chromosome two. The pink node represents a protein marked as undecided, because it has been found on either of the chromosomes in the template genome. Wide black edges mark local neighbourhood relation, the thin grey edge marks paralogous relation of two proteins. The undecided protein clusters are annotated as IS200/IS605 family transposases. The same transposase occuring multiple times in one genome might have lead to the misassembly because it creates a repeat region