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Fig. 5 | BMC Genomics

Fig. 5

From: Panakeia - a universal tool for bacterial pangenome analysis

Fig. 5

This Pangenome Subgraph is the result of pattern detection for InDels on a set of 318 genomes. Shown are only the protein clusters and edges belonging to any of the InDels detected by Patterns.py. The core (hard and soft) protein clusters are marked blue, the non-core (shell and cloud))protein clusters in red. InDels often belong to the shell (marking an insertion into a few strains). Very rare deletions are not detected by this analysis, as they would still be part of the core of the pangenome. InDels are often “attached” to the core through one or two core protein clusters which mark the location of the inDel. If they are attached to the hard core this way, inDels are either inherited in most genomes or represent a mobile element specific to a single insertion position

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