Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: Genetic architecture of salt tolerance in a Multi-Parent Advanced Generation Inter-Cross (MAGIC) cowpea population

Fig. 3

Manhattan plots for genome-wide association study (GWAS) corresponding to the average number of dead plants per pot (Dead), leaf injury score (Score), leaf SPAD chlorophyll under salt stress (S_Chloro), relative tolerance index for leaf SPAD chlorophyll (RTI_C), fresh leaf biomass under salt stress (S_Leaf), relative tolerance index for fresh leaf biomass (RTI_FL), relative tolerance for fresh stem biomass (RTI_FS), relative tolerance index for total above-ground fresh biomass (RTI_FB), and relative tolerance index for plant height (RTI_H). For each Manhattan plot, the x-axis represents the chromosome number and the y-axis indicates the –log10(p) where is the p-value corresponding to each SNP after running BLINK. The horizontal red line indicates the LOD threshold

Back to article page