Table 2 Simulated gene fusions called by Genion and LongGF
From: Genion, an accurate tool to detect gene fusion from long transcriptomics reads
Gene1 | Gene2 | Genion | LongGF | Gene1 | Gene2 | Genion | LongGF |
|---|---|---|---|---|---|---|---|
TCF3 | PBX1 | \(\checkmark \) | \(\checkmark \) | KMT2A | MLLT3 | \(\checkmark \) | \(\checkmark \) |
JAZF1 | SUZ12 | \(\checkmark \) | \(\checkmark \) | BCR | ABL1 | \(\checkmark \) | \(\checkmark \) |
DNAJB1 | PRKACA | \(\checkmark \) | \(\checkmark \) | TMPRSS2 | ERG | \(\checkmark \) | ✗ |
KIAA1549 | BRAF | \(\checkmark \) | \(\checkmark \) | CCDC6 | RET | \(\checkmark \) | \(\checkmark \) |
NAB2 | STAT6 | ✗ | ✗ | CBFA2T3 | GLIS2 | \(\checkmark \) | \(\checkmark \) |
EWSR1 | FLI1 | \(\checkmark \) | \(\checkmark \) | PML | RARA | \(\checkmark \) | \(\checkmark \) |
SS18 | SSX1 | \(\checkmark \) | \(\checkmark \) | RUNX1 | RUNX1T1 | \(\checkmark \) | \(\checkmark \) |
COL1A1 | PDGFB | \(\checkmark \) | \(\checkmark \) | CRTC1 | MAML2 | \(\checkmark \) | \(\checkmark \) |