Fig. 3

Depth of coverage of sequence reads from wild-type “Kitahonami” and the grain hardness mutant “30579” along the chromosomes. Distribution of the sliding window average of depth-of-coverage and the difference in depth-of-coverage (∆depth) between wild-type “Kitahonami” and the mutant “30579” was visualized along the chromosomes. q95 and q99 indicate 95% and 99% confidence intervals, respectively. The window size was 3 Mbp, and the step size was 1 Mbp. The asterisk (*) indicates a region with a large deletion whereas # indicates a large duplication