Fig. 9

The tests of deletion detection power under different depths of coverage conditions. Distribution of the sliding window average for the depth-of-coverage and the difference in depth-of-coverage (∆depth) between wild-type “Kitahonami” (WT) and the PHS-tolerant mutant “28511” on chromosome 3A, 3B and 3D based on simulated read coverage (15 × , 10 × , 5 × , and 2.5 ×). Chromosome 3BL shows a large deletion responsible for PHS tolerance with ∆depth above q95 and q99 indicate 95% and 99% confidence intervals, respectively