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Fig. 3 | BMC Genomics

Fig. 3

From: Whole-genome analyses reveal a novel prophage and cgSNPs-derived sublineages of Brachyspira hyodysenteriae ST196

Fig. 3

Schematic gene map displaying the modular organization of the novel prophage and its integration into the chromosome of the prophage-carrying Brachyspira hyodysenteriae isolate Bh743-7 of ST196. Image was created using Easyfig v2.1 (Sullivan et al., 2011). Each arrow represents an open reading frame and its orientation. Phage-like genes annotations are as follows: 1: Phage recombination protein Bet; 2: Winged helix-turn-helix transcriptional regulator; 3: N-6 DNA-methylase; 4: DUF4406 domain-containing protein; 5: Phage tail protein; 6: PBSX family phage terminase large subunit; 7−10: Phage capsid protein; 11: Phage tail protein; 12: Damage-inducible protein D; 13−14: Phage tail proteins; 15: Glycoside hydrolase family 19 protein; 16: Integrase. Phage-like genes are color-coded according to their respective modules: DNA replication (light blue), packaging/capsid morphogenesis (dark blue), tail morphogenesis (orange), lysis (green), recombination/‌integration (yellow), other functions (purple), unknown functions (violet) and hypothetical proteins (grey). Direct comparison of the structures of the new prophage and the VSH-1 gene transfer agent of B. hyodysenteriae is also shown

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