Fig. 4

Haplotype block length metrics in both scenarios. A, B Quality adjusted (QA) haplotype block lengths (Mb), and C, D number of SNPs in correctly phased blocks (× 1000), obtained with AlphaPhase1.3, Beagle4.1, Beagle5.2, Eagle2.4, FImpute3.0 and ShapeIT4.1, computed for the 98 validation individuals and plotted as a function of the proportion of the genome, in scenario 1 (A, C) with only the 98 validation individuals, and in scenario 2 (B, D) with the 264 sequenced individuals. The black curves with dots represent the total length of each chromosome (if they were perfectly phased) as a function of the proportion of the genome they cover