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Table 2 Gene-based analysis summary statistics of RCN3 in TOPMed Freeze 8 and UK Biobank: coding variants with MAF < 5%

From: Rare coding variants in RCN3 are associated with blood pressure

  

PP

SBP

DBP

  
 

NVAR

Beta

Burden P

SKAT P

Beta

Burden P

SKAT P

Beta

Burden P

SKAT P

TOPMed (discovery)

 AA (N = 26,590)

7

0.027

0.351

0.543

−0.010

0.752

0.885

−0.057

5.75 × 10−3

0.092

 EA (N = 15,284)

3

0.008

0.694

0.833

−0.033

0.228

0.411

−0.082

6.85 × 10−4

4.34 × 10−3

 EAS (N = 3826)

0

NA

NA

NA

NA

NA

NA

NA

NA

NA

 HA (N = 13,419)

5

−0.018

0.571

0.580

−0.051

0.240

0.135

−0.043

0.099

0.035

 Samoan (N = 1269)

0

NA

NA

NA

NA

NA

NA

NA

NA

NA

 Trans-ancestry (N = 60,388)

7

0.011

0.411

0.805

−0.022

0.178

0.218

− 0.051

1.36 × 10−5

8.11 × 10−5

UKB (replication)

 African (N = 6937)

4

−0.124

0.004

0.007

−0.249

5.90 × 10− 5

4.43 × 10− 4

− 0.126

3.93 × 10− 4

0.005

 European (N = 386,813)

4

0.021

0.004

0.006

0.034

5.80 × 10− 4

6.15 × 10− 4

0.013

0.018

0.011

 Asian (N = 9772)

3

−0.087

0.391

0.305

−0.095

0.503

0.514

−0.009

0.906

0.966

  1. Abbreviations: NVAR Number of linkage-based selected variants passing all filters for analysis), SBP Systolic blood pressure, DBP Diastolic blood pressure, PP Pulse pressure, AA African Americans, EA European Americans, EAS East Asians/Asian Americans, HA Hispanic Americans, SKAT Sequence Kernel Association Test
  2. Bolded p-values in UKB indicate significance after Bonferroni correction for 18 genes