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Table 1 TC-hunter summary report of all predicted transgene insertion sites across all the transgenic mice analyzed

From: TC-hunter: identification of the insertion site of a transgenic gene within the host genome

Sample

Host coverage average

Construct coverage average

TC-hunter score

Predicted breakpoint in host

Detected transgene region start—end

M41

49.53

166.26

10.026

chr16:62,428,722–62,428,726

7–6467a

8.011

chr9:74,912,357–74,969,077

4649–2894*

M42

44.34

35.67

15.035

chr16:32,944,479–32,974,010

4289–4129a

M45

49.40

260.81

16.051

chr9:74,912,357–74,969,077

4649–2894a

2.003

chr2:162,745,962–168,761,087

1994–7159*

1.005

chr5:41,746,993–41,746,992

6509–Unk*

1.000

chr18:61,488,405–61,488,404

1442–Unk*

M47

33.48

21.68

9.039

chr5:23,254,639–23,254,658

6537–269a

  1. aValidated breakpoints with Sanger sequencing