Table 3 Top 10 of differentially expressed genes from the pairwise comparisons in the study network. The first three columns result from the analysis of the merged data set, the last two columns results from the rank-based aggregation of differential expression analysis of the individual studies. The latter analysis does not yield p-values or fold changes but a score for each gene

Gene.ID

p

logfc

Name

Score

Gene.ID

p

logfc

Name

Score

IFI27

2,77E-13

1,94

OAZ2

1,05E−06

IFI27

1,91E-15

2,24

DAPK2

1,78E−06

GRAMD1C

3,81E-12

−0,7

TIGD3

1,09E−06

GRAMD1C

9,42E-12

−0,79

SIL1

2,25E-06

TIGD3

4,95E−12

−0,75

RNF141

1,62E−06

TIGD3

7,63E−08

− 0,66

KCTD14

2,72E− 06

CACNA2D3

5,80E-12

−0,96

TMCC1

1,89E−06

CACNA2D3

1,73E-10

-1,25

BUB1B

3,43E−06

CNTNAP3B

7,67E−10

-0,76

CABIN1

3,81E-06

CNTNAP3B

1,66E-07

-0,75

UBE2S

3,99E-06

STAP2

1,18E-09

0,47

LOC283588

4,16E-06

STAP2

1,58E-05

0,52

RGL2

6,12E-06

KCTD14

4,07E-09

0,99

CNTNAP3

4,34E-06

KCTD14

2,09E−10

0,91

CDC25A

9,55E-06

LOC283588

4,42E-09

-0,59

IFI27

7,72E-06

LOC283588

2,20E-08

-0,62

RNF141

9,55E-06

LINC00877

5,65E-09

-0,5

CD302

9,89E-06

LINC00877

4,02E-09

-0,56

MRPL40

1,04E-05

RNF141

6,49E-09

-0,39

MCM10

1,53E-05

RNF141

2,81E-07

-0,42

DTL

1,27E-05

Gene.ID

p

logfc

Name

Score

Gene.ID

p

logfc

Name

Score

KCTD14

4,75E−13

1,82

C6orf125

2,50E−05

IFI27

6,40E-30

3,07

TPX2

3,50E-10

IFI27

2,60E-12

2,31

MRPL22

0,00014352

DTL

2,73E-25

1,55

CDT1

6,79E−09

BARD1

8,54E-11

0,67

PTGS2

0,00015154

TPX2

3,40E-24

1,47

CDCA3

1,67E−08

MRPS18A

5,21E-10

0,58

CHMP1B

0,00017566

CDT1

5,50E-24

1,17

MKI67

1,40E−07

BIRC5

1,12E−09

1,03

FANCB

0,00018324

CACNA2D3

1,41E-23

-1,12

BAK1

4,05E−07

IFI27L1

1,60E− 09

0,99

HIST1H4K

0,00018324

CDC45

1,22E-22

1,09

KIF2C

4,50E−07

CDCA2

1,74E−09

1,1

LOC286052

0,00019229

CDCA3

1,13E-21

0,95

CDC20

6,62E− 07

CDCA8

2,01E−09

0,97

BARD1

0,00025716

C1QB

2,90E-21

1,25

DTL

8,39E−07

C16orf59

2,15E−09

0,6

IFI6

0,0002668

KIF2C

5,67E-21

0,99

CDC6

1,21E−06

MRPL22

2,48E−09

0,9

LOC285344

0,0002668

CDC20

5,94E-21

1,4

CHAF1A

2,08E−06

Gene.ID

p

logfc

Name

Score

Gene.ID

p

logfc

Name

Score

IFI27

1,30E-26

3,37

TPX2

2,54E−09

CDT1

1,18E-20

1,33

TPX2

0,00011887

TPX2

1,50E-22

1,58

CDCA3

8,31E−09

TPX2

8,68E-20

1,63

OLIG1

0,00037903

CDT1

6,40E-21

1,14

DTL

1,26E-07

OLIG1

6,12E-19

-1,63

MRPS18A

0,00139727

CDCA3

6,60E-21

1,11

UHRF1

1,92E-07

MRPL22

6,19E-19

0,99

IFI27

0,00220204

CACNA2D3

9,60E-21

-1,42

CDC20

3,30E-07

IFI27

3,02E-18

3,44

NDUFA11

0,00220204

DTL

2,10E-20

1,53

KIF20A

3,56E-07

CDCA8

3,09E-18

1,19

DAD1

0,00440286

TK1

2,99E-20

1,24

CDKN3

5,49E-07

MRPS18A

8,69E-18

0,65

KCTD14

0,00440286

KIF2C

7,06E-19

1,08

CHEK1

7,57E-07

BARD1

3,70E-17

0,67

GLUL

0,00660247

MKI67

1,20E-18

1,22

CDT1

8,36E-07

CDCA2

6,90E-17

1,27

PTGDR2

0,00660247

CENPA

1,98E-18

0,84

RRM2

9,09E-07

TK1

7,06E-17

1,37

PSMB6

0,00774382

Gene.ID

p

logfc

Name

Score

Gene.ID

p

logfc

Name

Score

ENPP5

3,22E-09

-0,46

PSKH2

3,94E-05

DNAJC15

7,73E-13

0,62

TRIP12

5,01E-05

NFE2L3

2,42E-07

-0,31

TRHR

4,57E-05

NME2

1,32E-12

0,43

DEFA4

0,0001334

ZNF675

3,75E-07

-0,3

CAMK2D

0,00013036

NELFE

4,72E-12

0,23

DNAJA1

0,0001334

RNF157-AS1

5,04E-07

-0,27

BTK

0,00019786

UQCRH

1,89E-11

0,5

LOC440474

0,00017441

LOC286087

6,10E-07

-0,52

TNF

0,00023865

PSMA6

5,85E-11

0,39

LOC283788

0,00019623

LOC158402

2,05E-06

-0,24

LOC153682

0,00024774

MDP1

6,15E-11

0,31

THBS1

0,00025415

CAMK2D

7,87E-06

-0,21

GAGE1

0,00028387

TMED7

7,01E-11

0,42

MKI67IP

0,0002668

LOC100128288

1,15E-05

-0,18

FIBCD1

0,00031375

SYVN1

8,75E-11

0,44

ROM1

0,0002668

SLC25A53

1,34E-05

-0,19

TRIM6

0,00032563

MTHFD1L

1,51E-10

0,44

FZD1

0,00029963

VPS41

1,54E-05

-0,19

LRP12

0,00035899

PSMA3

4,10E-10

0,52

PPFIBP2

0,00040019

Gene.ID

p

logfc

Name

Score

Gene.ID

p

logfc

Name

Score

NME2

1,52E-11

0,41

CARD9

0,0001334

LOC442209

3,91E-06

-0,41

NCLN

0,00012672

PSMB2

1,52E-11

0,45

IFT80

0,0002668

SIGLECP3

5,39E-06

-0,48

KCNE3

0,00013053

KCTD14

3,38E-11

0,91

TMEM174

0,0002668

GOLGA8B

3,92E-05

-0,33

NFKBIE

0,00017469

NELFE

3,51E-11

0,21

BTLA

0,00040019

C8orf71

5,25E-05

0,28

ZNF20

0,00025344

PSME2

2,95E-10

0,3

LOC144742

0,00040019

LOC391766

5,84E-05

-0,34

ZNF586

0,00025344

C4A

8,16E-10

-0,44

BCL6

0,00053358

RPL26

6,11E-05

-0,49

KLHL7

0,0002853

PSMA6

9,14E-10

0,37

GDPD5

0,00053358

ANKRD30B

6,91E-05

-0,34

EIF5B

0,00038015

APOBEC3H

1,86E-09

0,36

RASSF4

0,00066697

LOC391040

7,23E-05

0,29

SNAI3

0,00038015

DNAJC15

4,16E-09

0,56

CD68

0,00080035

LOC283070

8,04E-05

-0,36

RUNX3

0,0004266

PSMA3

4,77E-09

0,48

LOC441309

0,00080035

LOC122423

0,00012596

0,32

SUSD1

0,00045673