Type | Species | Number of CDSs | Average Similarity | Num of Gaps | |||||
---|---|---|---|---|---|---|---|---|---|
δ12 | δ13 | δ23 | δ | MAX | MIN | ||||
Real CDSs (ClustalW) | H. sapiens | 71,853 | 0.474 ± 0.039 | 0.454 ± 0.046 | 0.433 ± 0.043 | 0.464 ± 0.033 | 0.890 | 0.271 | 53.3 |
P. troglodytes | 15,781 | 0.473 ± 0.04 | 0.452 ± 0.047 | 0.431 ± 0.042 | 0.463 ± 0.034 | 0.657 | 0.309 | 48.9 | |
M. musculus | 27,208 | 0.469 ± 0.038 | 0.448 ± 0.046 | 0.43 ± 0.041 | 0.459 ± 0.033 | 0.739 | 0.286 | 52.5 | |
X. tropicalis | 7706 | 0.477 ± 0.038 | 0.455 ± 0.044 | 0.439 ± 0.042 | 0.466 ± 0.032 | 0.638 | 0.320 | 36.8 | |
D. rerio | 14,151 | 0.465 ± 0.036 | 0.443 ± 0.043 | 0.433 ± 0.038 | 0.454 ± 0.032 | 0.658 | 0.332 | 51.4 | |
D. melanogaster | 23,936 | 0.455 ± 0.039 | 0.432 ± 0.045 | 0.426 ± 0.039 | 0.444 ± 0.033 | 0.702 | 0.250 | 69.4 | |
C. elegans | 29,227 | 0.475 ± 0.037 | 0.444 ± 0.042 | 0.441 ± 0.042 | 0.459 ± 0.032 | 0.750 | 0.261 | 50.4 | |
A. thaliana | 35,378 | 0.468 ± 0.038 | 0.439 ± 0.042 | 0.436 ± 0.043 | 0.453 ± 0.032 | 0.828 | 0.217 | 47.6 | |
S. cerevisiae | 5889 | 0.482 ± 0.043 | 0.451 ± 0.042 | 0.463 ± 0.047 | 0.467 ± 0.035 | 0.692 | 0.259 | 39.7 | |
E.coli | 4140 | 0.441 ± 0.039 | 0.415 ± 0.043 | 0.408 ± 0.042 | 0.428 ± 0.032 | 0.614 | 0.280 | 45.6 | |
Average | 235,269 | 0.468 ± 0.039 | 0.443 ± 0.044 | 0.434 ± 0.042 | 0.456 ± 0.033 | 0.890a | 0.217a | 49.6 | |
Random CDSs (ClustalW) | Three frames | 100000 × 3 | 0.475 ± 0.019 | 0.428 ± 0.020 | 0.427 ± 0.020 | 0.452 ± 0.013 | 0.512 | 0.391 | 80.1 |
Three random CDSs | 100000 × 3 | 0.476 ± 0.019 | 0.429 ± 0.020 | 0.428 ± 0.020 | 0.452 ± 0.013 | 0.520 | 0.388 | 137.1 | |
Random CDSs (MSA) | Three frames | 100000 × 3 | 0.409 ± 0.06 | 0.411 ± 0.059 | 0.448 ± 0.044 | 0.410 ± 0.055 | 0.541 | 0.207 | 108.27 |
Three random CDSs | 100000 × 3 | 0.411 ± 0.06 | 0.413 ± 0.059 | 0.447 ± 0.043 | 0.412 ± 0.055 | 0.540 | 0.201 | 109.47 |