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Table 2 List of the variants of 5S rDNA unit in C. elegans (N2a) used in this study

From: Genomic architecture of 5S rDNA cluster and its variations within and between species

Variant

Size (bp)

Copy number

Sequence variation relative to cel-5S unit 1.1

unit 1.1

976

Dynamic

Not applicable

unit 1.2

971

2

766_771delinsC

unit 1.3

972

16

99_102del, 162C > G

unit 1.4

976

2

621 T > G

unit 1.5

946

3

780_809del, 621 T > G

unit 1.6

972

2

99_102del, 162C > G, 220C > A, 621 T > G

unit 1.7

976

4

220C > A, 621 T > G

unit 1.9

976

9

99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 339C > T, 621 T > G

unit 1.10

976

1

99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > A, 332 T > G, 339C > T, 621 T > G

unit 1.11

976

3

99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 339C > T, 431 T > G, 621 T > G

unit 1.12

963

4

99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 339C > T, 393_405del, 431 T > G, 621 T > G

unit 1.13

976

6

99_102del, 162C > G, 318 T > C, 325_326insCAAT, 329G > A, 332 T > G, 339C > T, 431 T > G, 621 T > G, 636 T > G

unit 1.14

980

6

309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 621 T > G

unit 1.15

950

1

780_809del, 220C > A, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 621 T > G

unit 1.16

976

1

99_102del, 162C > G, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 621 T > G

unit 1.18

984

1

99_102del, 162C > G, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 354_355insGGTATT, 367A > T, 371 T > A, 621 T > G, 718_719insGA

unit 1.19

982

3

99_102del, 162C > G, 309 T > C, 318 T > C, 325_326insCAAT, 329G > T, 332 T > G, 354_355insGGTATT, 367A > T, 371 T > A, 621 T > G

unit 1.20

972

15

99_102del, 162C > G, 431 T > G, 621 T > G

unit 1.21

976

1

162C > G, 621 T > G

unit 1.23

972

29

99_102del, 162C > G, 621 T > G

unit 1.24

942

7

780_809del, 99_102del, 162C > G, 621 T > G

unit 1.26

976

1

99_102del, 162C > G, 335G > C, 407C > T, 621 T > G

unit s1a

975

0

99_102del, 162C > G, 318_319insA, 390delC, 621 T > G

unit s2a

981

0

354_355insGGTATT, 367A > T, 371 T > A, 545G > A, 621 T > G

unit s3a

972

0

325_326insCAAT, 329G > A, 332 T > G, 339C > T, 431 T > G,621 T > G

  1. aCombinations of variants in s1-s3 are not identified in the 5S rDNA cluster. Del deletion, Ins insertion, Delins deletion followed by insertion