From: High-quality chromosome-scale de novo assembly of the Paspalum notatum ‘Flugge’ genome
Assembly | ||
Genome assembly | Estimated genome size | 549 M |
Total length of assembly | 541 M | |
Number of contigs | 79 | |
Contig N50 | 52Mbp | |
Largest contig | 126Mbp | |
Number of scaffolds | 49 | |
Scaffold N50 | 49Mbp | |
Chromosome coverage(%) | 95.15% | |
GC content of genome | 45.65% | |
Annotation | Total length | |
Transposable elements | Total | 328Mbp(60.64%) |
Retrotransposon | 263Mbp(49.38%) | |
DNA Transposon | 20Mbp (3.71%) | |
Copies | ||
Noncoding RNAs | rRNAs | 828 |
tRNAs | 846 | |
miRNAs | 133 | |
snRNAs | 1708 | |
Gene models | Number of genes | 36,511 |
Mean gene length | 4029 bp | |
Mean coding sequence length | 1503 bp |