Clade | Percentage of Similarity in clade | Number of Samples in clade | Number of Variants Identified | After pruning number in Chromosome | After Pruning number in pO157 | Other (plasmids specific to clade) | Total of Informative SNPs |
---|---|---|---|---|---|---|---|
Overall | 88.3% | 181 | 2386 | 186 | 23 | N/A | 209 |
1: stx2c | 90.5% | 59 | 347 | 118 | 2 | 1 (6.1 kb) | 121 |
2: stx1a stx2c | 90.8% | 47 | 351 | 74 | 6 | 4 (40 kb) | 84 |
3: mixed | 90.0% | 32 | 343 | 48 | 5 | N/A | 53 |
4: stx1a stx2a | 90.3% | 37 | 671 | 74 | 5 | N/A | 79 |