Fig. 1

Circos visualization of Evry.Ler-1 SVs landscape. All comparisons were performed against the Col-0 TAIR10.1 reference genome per 100kb bins. From external to internal layer (Circle1 to Circle7): Circle1: Col-0 TAIR10.1 chromosomes (ticks every 100 kb): black and light grey rectangles represent centromeric and NOR regions respectively; Circle2: Average mapping coverage for Evry.Col-0 ONT reads (grey line) and Evry.Ler-1 ONT reads (orange line) with dark orange if coverage > 46X; Circle3: DLE-1 label density as purple line (dark purple if density > 18 label per 100 kb); Circle4: Genes density as green line (dark green if density > 23), NLR Genes [58] indicated as green rectangles; Circle5: TEs density as blue line (dark blue if density > 58); Circle6: ONT SVs occurrences as orange outward bars (dark orange bars represent ONT- specific SVs); Circle7: Bionano SVs occurrences as purple inward bars (dark purple bars represent Bionano-specific SVs)