Skip to main content
Fig. 3 | BMC Genomics

Fig. 3

From: Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Fig. 3

Focus of large structural variations (MU) located in complex locations. For each location, optical maps are colored in green for the Col-0 TAIR10.1 reference maps (ChrM for mitochondrial chromosome map) and light blue for Evry.Ler-1 maps. Consistent DLE-1 enzyme label between reference and Evry.Ler-1 maps are represented by dark blue bars with grey links between the genome maps. Inconsistent DLE-1 enzyme label are shown by yellow bars on the two genome maps. The purple bars represent the insertion events on the Evry.Ler-1 maps / read / assembly, and the black, yellow and pink bars correspond to deletions, inversions and translocations respectively. Araport11 annotation of the Col-0 TAIR10.1 reference (Genes and TE) and IGV view of the Evry.Ler-1 trimmed ONT reads and SMARTdenovo contigs minimap alignments are also presented. A Bionano Chr2 Evry.Ler-1 translocations against Col-0 TAIR10.1 reference genome (MU_153). B Bionano Chr4 Evry.Ler-1 extra-range size inversion against Col-0 TAIR10.1 reference genome (MU_097). C Bionano Chr4 Evry.Ler-1 large deletion against Col-0 TAIR10.1 reference genome (MU_102). D Bionano Chr5 Evry.Ler-1 inversion against Col-0 TAIR10.1 reference genome (MU_138)

Back to article page