Skip to main content

Table 1 Characteristics of Evry.Ler-1 ONT and Bionano SVs, obtained after alignment against Col-0 TAIR10.1 reference genome

From: Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variation detection

Technology ONT Bionano
SV type INS DEL INV TOTAL INS DEL INV TRA TOTAL
SV > 1 kb (%) 591 (49.9) 581 (49.1) 12 (1.0) 1184 289 (48.9) 295 (49.9) 5 (0.8) 2 (0.4) 591
Cumulated Size 3.4 4.0 0.3 7.7 2.9 2.3 1.6 0.4 7.2
Median Size 3358 3446 17,012 3455 4383 4296 166,007 189,454 4383
Average Size 5724 6801 26,865 6467 10,021 7885 310,470 189,454 12,104
  1. Cumulated sizes are in Mb, Median and Average sizes in bp