Table 1 Characteristics of Evry.Ler-1 ONT and Bionano SVs, obtained after alignment against Col-0 TAIR10.1 reference genome
Technology | ONT | Bionano | |||||||
|---|---|---|---|---|---|---|---|---|---|
SV type | INS | DEL | INV | TOTAL | INS | DEL | INV | TRA | TOTAL |
SV > 1 kb (%) | 591 (49.9) | 581 (49.1) | 12 (1.0) | 1184 | 289 (48.9) | 295 (49.9) | 5 (0.8) | 2 (0.4) | 591 |
Cumulated Size | 3.4 | 4.0 | 0.3 | 7.7 | 2.9 | 2.3 | 1.6 | 0.4 | 7.2 |
Median Size | 3358 | 3446 | 17,012 | 3455 | 4383 | 4296 | 166,007 | 189,454 | 4383 |
Average Size | 5724 | 6801 | 26,865 | 6467 | 10,021 | 7885 | 310,470 | 189,454 | 12,104 |