Table 2 Draft genome obtained from ONT sequencing, Pilon polishing, and CheckM quality evaluation
Tool | Parameters | Chromosome | Plasmid-like DNA |
|---|---|---|---|
FLYE | Length, bp | 4,262,877 | 175,292 |
CheckM | CheckM genome size, bp | 4,262,877 | |
CheckM completeness | 0.8166 | ||
CheckM contamination | 0.0083 | ||
Strain heterogeneity | 0 | ||
Pilon | Length, bp | 4,239,915 | 174,141 |
Total reads | 16,188,437 | 655,781 | |
Coverage | 473 | 463 | |
MinDepth | 47 | 46 | |
Confirmed bases | 0.9915 | 0.9934 | |
Corrected SNPs | 317 | 17 | |
Corrected ambiguous bases | 1 | 0 | |
Corrected small insertions/total bases | 1,022/1,274 | 59/86 | |
Small deletions | 15,269 | 750 | |
Polished CheckM | CheckM genome size, bp | 4,239,915 | |
CheckM completeness | 0.9602 | ||
CheckM contamination | 0.0029 | ||
Strain heterogeneity | 0 | ||