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Table 2 Draft genome obtained from ONT sequencing, Pilon polishing, and CheckM quality evaluation

From: Genomic and resistome analysis of Alcaligenes faecalis strain PGB1 by Nanopore MinION and Illumina Technologies

Tool Parameters Chromosome Plasmid-like DNA
FLYE Length, bp 4,262,877 175,292
CheckM CheckM genome size, bp 4,262,877
CheckM completeness 0.8166
CheckM contamination 0.0083
Strain heterogeneity 0
Pilon Length, bp 4,239,915 174,141
Total reads 16,188,437 655,781
Coverage 473 463
MinDepth 47 46
Confirmed bases 0.9915 0.9934
Corrected SNPs 317 17
Corrected ambiguous bases 1 0
Corrected small insertions/total bases 1,022/1,274 59/86
Small deletions 15,269 750
Polished CheckM CheckM genome size, bp 4,239,915
CheckM completeness 0.9602
CheckM contamination 0.0029
Strain heterogeneity 0