Table 4 Antibiotic resistance genes predicted by AMR database
Target identifier | Gene symbol | Protein name | Method | Target length | Reference protein length | % Coverage of reference protein | % Identity to reference protein | Alignment length | Accession of closest protein | Name of closest protein | HMM id | HMM description |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
PGB1_chr_1397 | aph(3') | APH(3') family aminoglycoside O-phosphotransferase | HMM | 257 | NA | NA | NA | NA | NA | NA | NF033068.1 | APH(3') family aminoglycoside O-phosphotransferase |
PGB1_chr_3891 | bla | class A beta-lactamase | HMM | 292 | NA | NA | NA | NA | NA | NA | NF033103.1 | class A beta-lactamase |
PGB1-pla_47 | aph(3'')-Ib | aminoglycoside O-phosphotransferase APH(3'')-Ib | PARTIAL | 140 | 267 | 52.06 | 100 | 139 | WP_001082319.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib | NF032895.1 | aminoglycoside O-phosphotransferase APH(3'')-Ib |
PGB1-pla_48 | aph(6)-Id | aminoglycoside O-phosphotransferase APH(6)-Id | PARTIAL | 248 | 278 | 88.85 | 99.6 | 247 | WP_000480968.1 | aminoglycoside O-phosphotransferase APH(6)-Id | NF012171.0 | APH(6)-I family aminoglycoside O-phosphotransferase |